PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D08G0562 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 303aa MW: 34253.7 Da PI: 4.8956 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l++ + G +W+++++ g+ R++k+c++rw +yl Gh_D08G0562 14 KGPWTAEEDQKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 71 | 111 | 5 | 47 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++ E++ +++++qlG++ W++Ia++++ gRt++++k++w+++ Gh_D08G0562 71 SEYEEQMVIELHAQLGNR-WSKIASHLP-GRTDNEIKNHWNTH 111 6779**************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 5 | 63 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.369 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.06E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.13E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.688 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-25 | 64 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-14 | 71 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.87E-11 | 74 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MGRQPCCDKV GLKKGPWTAE EDQKLINFIL TNGQCCWRAV PKLAGLLRCG KSCRLRWTNY 60 LRPDLKRGLL SEYEEQMVIE LHAQLGNRWS KIASHLPGRT DNEIKNHWNT HIKKKLKKMG 120 IDPLTHKALS GTTTEPQQSQ QKNQVSKGGL KSQVVDKSPK EPETSLQSSI SEEKSTGSPL 180 FDPMEMMMMM DNADGFCTDE VPLIEPHEIL VPAAPSTSSS CDSSKLLEEL QLPDFEWPSD 240 CNTSSDDNNN NKMSLWDDDD FNNTWGDLLS DRSELALDDS LSSPLIQCPT RMPFDQEYSW 300 AYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-29 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in chalaza of mature seeds, cotyledons, rosette leaves, cauline leaves, veins of stems, mature siliques, sepals and styles. Expressed at low levels in roots. {ECO:0000269|PubMed:23660402}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX618995 | 1e-171 | JX618995.1 Gossypium hirsutum clone NBRI_GE64682 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016700190.1 | 0.0 | PREDICTED: protein ODORANT1-like | ||||
Swissprot | Q9C7U7 | 2e-94 | MYB20_ARATH; Transcription factor MYB20 | ||||
TrEMBL | A0A1U8KCH0 | 0.0 | A0A1U8KCH0_GOSHI; protein ODORANT1-like | ||||
STRING | Gorai.004G064100.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 2e-98 | myb domain protein 43 |
Publications ? help Back to Top | |||
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