PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D08G0461 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 296aa MW: 33418.1 Da PI: 6.3733 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5.1e-19 | 76 | 124 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Gh_D08G0461 76 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 124 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.29E-22 | 75 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-32 | 75 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-37 | 75 | 138 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.775 | 75 | 132 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.9E-12 | 76 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-12 | 76 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.25E-33 | 76 | 133 | No hit | No description |
PRINTS | PR00367 | 7.5E-12 | 98 | 114 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 296 aa Download sequence Send to blast |
MCGGAIISEF ITRKGGHGVT ASDIWPNSPF VKNGFSSDST QSFHDDSLAL CKRHRPQSSD 60 GVQVEKKVKR QRKNLYRGIR QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AARAYDREAR 120 KIRGKKAKVN FPNEDDAFST QYNPQINNST TAWNFTHPSN PPIYQHPQVN NGFRYGWNDL 180 GGFATDPIVV SEEDSSGSGD QKTNLCYLPV KPEEQQEGEA VNKSAIFEVQ EEENQVQKLS 240 EELIAYENYM KFYQIPYLDG QSPMTQNAVA QQESVFGELW NFLADGVAVP PTSMPM |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-22 | 76 | 132 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 66 | 71 | KVKRQR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016702145.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF071-like | ||||
TrEMBL | A0A1U8KI49 | 0.0 | A0A1U8KI49_GOSHI; ethylene-responsive transcription factor ERF071-like | ||||
STRING | Gorai.004G051600.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G16770.1 | 3e-29 | ethylene-responsive element binding protein |