PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D08G0336 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 214aa MW: 24556.3 Da PI: 6.1593 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.5 | 7.4e-21 | 90 | 150 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ +e+ + +ps+++++e+A++l +++e++V++WFqNrRa+ k+ Gh_D08G0336 90 RQRWTPTALQLQILENIYEQgTGTPSKQKIKEMASELaqhgQISETNVYNWFQNRRARSKR 150 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 98.7 | 4.6e-32 | 89 | 151 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ar+RWtPt+ Q++iLe++y++G+ tP+k++i+++++eL+++G+i+++NV++WFQNr+aR+++k Gh_D08G0336 89 ARQRWTPTALQLQILENIYEQGTGTPSKQKIKEMASELAQHGQISETNVYNWFQNRRARSKRK 151 789***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-17 | 86 | 158 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.641 | 86 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-13 | 88 | 155 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-18 | 89 | 153 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.7E-18 | 90 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.66E-13 | 90 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MDWENQEMQH HQQGEDYLQY QIQNGVCGKV MTDEQVEELR KQIVAYSAIS EQLAELHKSM 60 STHHNFTGIR VGNLYCDPIS ASVGHKITAR QRWTPTALQL QILENIYEQG TGTPSKQKIK 120 EMASELAQHG QISETNVYNW FQNRRARSKR KLQSSTDSVN AETDMSTKEK RTKPVDPDFI 180 TNISQGVESF YFQASISRGY DSYNNLAEQF ELLG |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX589236 | 5e-75 | JX589236.1 Gossypium hirsutum clone NBRI_GE23895 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016725792.1 | 1e-162 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 2e-60 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A1U8MG37 | 1e-160 | A0A1U8MG37_GOSHI; WUSCHEL-related homeobox 8-like | ||||
STRING | Gorai.004G038300.1 | 1e-156 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17223 | 6 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35550.1 | 7e-60 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
---|---|---|---|
|