PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D08G0269
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 313aa    MW: 34241.3 Da    PI: 6.426
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D08G0269genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box315.3e-102462341
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkgHtvvp 41
                 +++C+ +++  + +fC+++ ++lC +C ++ H+gH++v+
  Gh_D08G0269 24 AKTCDACKSSAAAIFCRTDWVFLCLNCDSNFHSGHERVS 62
                 579******99*************************987 PP
2zf-B_box26.31.5e-0862106442
     zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   +C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  Gh_D08G0269  62 SMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPI 106
                  68*****************************66899999*99997 PP
3CCT70.83.5e-24235278144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++
  Gh_D08G0269 235 REARVLRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 278
                  9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.0542263IPR000315B-box-type zinc finger
SMARTSM003361.7E-82263IPR000315B-box-type zinc finger
PfamPF006438.3E-82562IPR000315B-box-type zinc finger
CDDcd000213.93E-72763No hitNo description
PROSITE profilePS5011911.20659106IPR000315B-box-type zinc finger
PfamPF006438.9E-761106IPR000315B-box-type zinc finger
CDDcd000211.04E-863106No hitNo description
SMARTSM003367.1E-1164106IPR000315B-box-type zinc finger
PfamPF062033.1E-18235277IPR010402CCT domain
PROSITE profilePS5101716.668235277IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MGIEISGGTI IPGGWGAAAM AVAAKTCDAC KSSAAAIFCR TDWVFLCLNC DSNFHSGHER  60
VSMCEVCEQA PAAVTCKADA AALCVTCDAD IHSANPLARR HERVPIEPFY DSADSIVKSS  120
PFSFLVPTTD HNGTNCKQEI ESNKGDFFFT EMDRFIDFGY PNSSQHLHDA AMDSVVPVQT  180
PKPVIPLIND GSCFDTFSYQ TQSSLSHSVS SSSLEVGTVP DGNYHATQVG GSIDREARVL  240
RYKEKRKNRK FEKTIRYASR KAYAESRPRI KGRFAKRTET HNDDVDHMFN NSSFAVGPAG  300
FMAETDYGVV PSF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.18010.0boll| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6183310.0JQ618331.1 Gossypium hirsutum constans-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001314107.10.0zinc finger protein CONSTANS-LIKE 5-like
RefseqXP_012473161.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
SwissprotQ9FHH81e-103COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLA0A0D2MSU70.0A0A0D2MSU7_GOSRA; CONSTANS-like 6 protein
TrEMBLA0A0D3R2530.0A0A0D3R253_GOSHI; CONSTANS-like 6 protein
TrEMBLA0A0D3R2E20.0A0A0D3R2E2_GOSHI; CONSTANS-like 6 protein
TrEMBLA0A0D3R2F50.0A0A0D3R2F5_GOSHI; CONSTANS-like 6 protein
TrEMBLA0A0D3R2G20.0A0A0D3R2G2_GOSTO; CONSTANS-like 6 protein
TrEMBLA0A0D3R2I10.0A0A0D3R2I1_GOSBA; CONSTANS-like 6 protein
TrEMBLA0A0D3R2X70.0A0A0D3R2X7_GOSBA; CONSTANS-like 6 protein
TrEMBLA0A0D3R2Y40.0A0A0D3R2Y4_GOSDA; CONSTANS-like 6 protein
TrEMBLA0A0D3R3250.0A0A0D3R325_GOSBA; CONSTANS-like 6 protein
TrEMBLA0A0D3R3410.0A0A0D3R341_GOSMU; CONSTANS-like 6 protein
TrEMBLW5QLX80.0W5QLX8_GOSHI; CONSTANS-like 6 protein
STRINGGorai.004G030300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2440334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.11e-102CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]
  2. Zhang R, et al.
    Molecular evolution and phylogenetic analysis of eight COL superfamily genes in group I related to photoperiodic regulation of flowering time in wild and domesticated cotton (Gossypium) species.
    PLoS ONE, 2015. 10(2): p. e0118669
    [PMID:25710777]