PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2498
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 220aa    MW: 24961.8 Da    PI: 4.5445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2498genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-1787137255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                   y+GVr ++ +g+++AeIrd +    + +r++lg+f++ae Aa a+++a+  ++g
  Gh_D07G2498  87 SYRGVRKRP-WGKFAAEIRDSTR---HgARVWLGTFDSAEAAALAYDQAAFLMRG 137
                  69*******.**********422...25***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.43E-2086145No hitNo description
Gene3DG3DSA:3.30.730.109.2E-3187146IPR001471AP2/ERF domain
SMARTSM003801.7E-3687151IPR001471AP2/ERF domain
SuperFamilySSF541714.97E-2287146IPR016177DNA-binding domain
PfamPF008474.2E-1387137IPR001471AP2/ERF domain
PROSITE profilePS5103222.90687145IPR001471AP2/ERF domain
PRINTSPR003672.6E-108899IPR001471AP2/ERF domain
PRINTSPR003672.6E-10111127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEEESWLFQY SNNADLSAFV SEEAFSSSCE WDELLLKFNI SQETAWMDLL GDEEEERGKA  60
SSECSDNSID GVKEEEVCSE EPKETKSYRG VRKRPWGKFA AEIRDSTRHG ARVWLGTFDS  120
AEAAALAYDQ AAFLMRGPSA TLNFPTEAVK ASLKELKCRC DEDKGWSPVV DLKNRYSSRK  180
RSKNKKIKPK DAALRQQQNL LVFEDLGADY LEQLLISSCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-28841471174Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185KRSKNKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6157212e-77JX615721.1 Gossypium hirsutum clone NBRI_GE59864 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448636.11e-160PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y92e-54ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A2P5PV041e-159A0A2P5PV04_GOSBA; Uncharacterized protein
STRINGGorai.001G253000.11e-159(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1898938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-33ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]