PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G2426

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 294aa MW: 32486.1 Da PI: 6.3673

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G2426	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.9	2.1e-09	208	251	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++L kA+ Y+k Lq Gh_D07G2426 208 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLDKAISYVKFLQ 251 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.24E-14	199	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.301	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-12	202	258	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.07E-11	203	255	No hit	No description
SMART	SM00353	1.0E-11	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	209	251	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MALAKDPICS LQTSSFNNGN FDEGGDDHLK KLGGGVNNFQ MTSSSSCYSP GSVDSDSFVF 60 RPPHEEVHSL INFKGSSMYD NFIYQYHHGT NYGSLLSFEQ NEKAPQSGTY LKRASQKDNY 120 SMWDPRLVED FSCFETASNF SSKENNGDWL YSESAMDADS IPELRSPGVA GVKRLNTGDS 180 TQALKKQCSN EAKKAKSKSG PSKDPQSIAA KNRRERISER LKILQELVPN GSKVDLVTML 240 DKAISYVKFL QLQVKVLATD EFWPVQGGKA PDISQVREAI DAILSSSQKD MNSS

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX594152	2e-31	JX594152.1 Gossypium hirsutum clone NBRI_GE30032 microsatellite sequence.
GenBank	JX609047	2e-31	JX609047.1 Gossypium hirsutum clone NBRI_GE50131 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747694.1	0.0	PREDICTED: putative transcription factor bHLH086
Swissprot	Q9FJ00	5e-67	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A1U8PBQ1	0.0	A0A1U8PBQ1_GOSHI; putative transcription factor bHLH086
STRING	Gorai.001G086800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	5e-67	RHD SIX-LIKE 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]