PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G2328 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 166aa MW: 19325 Da PI: 10.0218 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.9 | 2e-33 | 87 | 145 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d++vv++tYeg H+h+ Gh_D07G2328 87 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHEGCKVKKQVQRLTKDESVVVTTYEGMHTHP 145 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-34 | 72 | 145 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.15E-30 | 79 | 146 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.7 | 82 | 147 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-39 | 87 | 146 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-27 | 88 | 145 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence Send to blast |
MENYQMFFPI SAPSTAAQSL PLNMAPNSQA FNSFHGNSVD GFLGLKSTED LIQKPEAKDF 60 MKSSQKMEKK IRKPRYAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY YRCTHEGCKV 120 KKQVQRLTKD ESVVVTTYEG MHTHPIQKPT DNFEHILSQM QIYTPF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-28 | 77 | 146 | 7 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 3e-28 | 77 | 146 | 7 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.23261 | 0.0 | boll |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ640573 | 0.0 | JQ640573.1 Gossypium barbadense WRKY transcription factor (WRKY1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012446088.1 | 1e-124 | PREDICTED: probable WRKY transcription factor 75 | ||||
Refseq | XP_016686835.1 | 1e-124 | PREDICTED: probable WRKY transcription factor 75 | ||||
Swissprot | Q9FYA2 | 6e-56 | WRK75_ARATH; Probable WRKY transcription factor 75 | ||||
TrEMBL | A0A0D2NF01 | 1e-123 | A0A0D2NF01_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J933 | 1e-123 | A0A1U8J933_GOSHI; probable WRKY transcription factor 75 | ||||
TrEMBL | H9XSZ5 | 1e-123 | H9XSZ5_GOSBA; WRKY transcription factor | ||||
STRING | Gorai.001G273100.1 | 1e-124 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM509 | 28 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 3e-58 | WRKY DNA-binding protein 75 |