PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G2184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 251aa MW: 28665.1 Da PI: 7.3618 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.4e-17 | 67 | 119 | 5 | 57 |
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +q+++Le+ Fe +++ ++ +LAk lgL+ rq+ +WFqNrRa++k+ Gh_D07G2184 67 KRLNMDQVKALEKSFELRNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKN 119 56889**********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 121.2 | 5.3e-39 | 65 | 155 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +k+rl+ +qvk+LE+sFe ++kLep rK +la++Lgl+prq+a+WFqnrRAR+k+kqlEkdy+aLk+ y++ k++n++L++++++L+++l Gh_D07G2184 65 NKKRLNMDQVKALEKSFELRNKLEPGRKLQLAKDLGLKPRQIAIWFQNRRARWKNKQLEKDYDALKKLYQTAKADNDALHAQNKKLTAQLL 155 79*************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.67E-18 | 48 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.487 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.1E-15 | 63 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.02E-14 | 66 | 121 | No hit | No description |
Pfam | PF00046 | 5.9E-15 | 66 | 119 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-19 | 67 | 128 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.7E-11 | 120 | 160 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MAFPPHAFMF QTLHEDQNHF PSPYSLLPCP PQLFHGGVGK SHQEVHGHGD DDEYSDDDGS 60 HGGENKKRLN MDQVKALEKS FELRNKLEPG RKLQLAKDLG LKPRQIAIWF QNRRARWKNK 120 QLEKDYDALK KLYQTAKADN DALHAQNKKL TAQLLSLKAK DSNETRIKNE NEGSWCSNGS 180 ENNYDMNLAI RPAATMTQLL HGSSKPSLQC LKLDQVVQQD QSLACHMFNQ DGDEQQGFWP 240 WADQSIKFPL N |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKNKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed predominantly in flowers, and in the cortex of the root and the stem. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016749921.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 8e-70 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A1U8PFC7 | 0.0 | A0A1U8PFC7_GOSHI; homeobox-leucine zipper protein HAT7-like | ||||
STRING | Gorai.001G256300.1 | 1e-170 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24696 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-65 | homeobox 3 |