PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2107
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 546aa    MW: 60303 Da    PI: 9.2072
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2107genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.22.2e-30200257260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK++kg e++rsYY+Ct+ +Cpvkkkvers+ d+ ++ei Y+g Hnhek
  Gh_D07G2107 200 EDGYNWRKYGQKPIKGCEYSRSYYKCTHLKCPVKKKVERST-DGLITEILYKGAHNHEK 257
                  8****************************************.***************85 PP
2WRKY105.13.6e-33380438159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver++ dp++v++tYeg+Hnh+
  Gh_D07G2107 380 LDDGYRWRKYGQKVVKGNPHPRSYYKCTNEGCNVRKHVERASMDPRAVITTYEGKHNHD 438
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.114194258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.8E-27195259IPR003657WRKY domain
SuperFamilySSF1182905.1E-24197258IPR003657WRKY domain
SMARTSM007743.6E-34199257IPR003657WRKY domain
PfamPF031062.6E-23200256IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-36365440IPR003657WRKY domain
SuperFamilySSF1182907.98E-29372440IPR003657WRKY domain
PROSITE profilePS5081138.216375440IPR003657WRKY domain
SMARTSM007742.2E-39380439IPR003657WRKY domain
PfamPF031063.3E-26381438IPR003657WRKY domain
Gene3DG3DSA:2.40.50.1404.4E-4461485IPR012340Nucleic acid-binding, OB-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAEQGTSSKL SAPTRPTIAL PPTPAMDSLF SDGSGLSPGP MTLVSAFFSN QDSTENRPFS  60
QLLAGAMASP GYRLPYSSMD GSLMDVCFKD GGEKRSEPLN FSVPNSALFT VPPRLSPSGL  120
LNSPAFYCLS PQSPFGISHQ QALAQVTAQA AIAQSLNHEE TSSQMAPSAS GLQSSTMEYA  180
EASQFDGKNQ PSVAVDKPAE DGYNWRKYGQ KPIKGCEYSR SYYKCTHLKC PVKKKVERST  240
DGLITEILYK GAHNHEKPQP NKQGTGSSDG NANSQAPELG CQGLTGNLNK LNAVVPVCSN  300
LGKIMNLLKL QNYLDQVRMR NTVTKRVETK EIIMMNRIRK EVQRAFDCRN AATEAAIAFS  360
HKTVTEPKIV VQTRSEVELL DDGYRWRKYG QKVVKGNPHP RSYYKCTNEG CNVRKHVERA  420
SMDPRAVITT YEGKHNHDVP TSRNSVHTQL TTICCSQNHK RPVTDFNEIA KHFIEGIYVH  480
LYNTNLRGGM TTQPEVANSN FGNPTKSYGY QTNLTNQFSG QYNTVEEQIR GVSSKVLQYL  540
RRLACL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-37200440877Probable WRKY transcription factor 4
2lex_A1e-37200440877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.238663e-91boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310980.0KF031098.1 Gossypium hirsutum WRKY transcription factor 59 (WRKY59) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012441426.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-118WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0D2M2I90.0A0A0D2M2I9_GOSRA; Uncharacterized protein
STRINGGorai.001G241200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-110WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]