PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2050
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 564aa    MW: 61451.8 Da    PI: 6.3045
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2050genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.6e-16356402455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                   hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Gh_D07G2050 356 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 402
                  6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-21350421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.044352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.60E-17355406No hitNo description
PfamPF000103.4E-13356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-21356415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MNHCVPDFEM EDDYSIPSSS ILNRARKPSM PEDGIMELLW QNGQVVMQSQ NQRSFKKPSP  60
FKYLDAGQSA LREIRSSSHH QQQQQQQQQQ QQQQSVTDHL FMQEDEMASW LHNPLSDANF  120
DHDFCADLLY PSSSTAVAPC ATCTATTSAP PPPPLGRVPQ VSVSAMVPAS RPPIPPARRN  180
ELESTRIQNF GSLSKHKTAA REEQPGPSNS KSVAREVTVV DSSDTPAAAP ESGASQAIPC  240
NTEAASGEYN NDACANMSFA AVAYTQSAGV SVGASKDNIA TCEATVTSSP GGSSASASAS  300
AEPTAQKTGP AEDRKRKGRE PDDAECHSED AEFESPETKK QSRGSSSTKR SRAAEVHNLS  360
ERRRRDRINE KMRALQELIP RCNKSDKASM LDEAIEYLKS LQLQVQMMSM GCGMLPMMFP  420
QHYMPTMGMG IGMGMVMDMG LSRPMMPFHN VMAGSGLPTP AASAHLDPRF PVPAFHMSPQ  480
VPVPDPSRIQ PNNQSDAMLN PLGMQNPNQP RIPSFADPYQ QYMGLHQMQL HPPQCQATAQ  540
PSSSKPSTSK GVENLENHPS VLIY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1360365ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.127910.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3942607e-36GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016712088.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_016712089.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_016712090.10.0PREDICTED: transcription factor PIF1-like
RefseqXP_016712091.10.0PREDICTED: transcription factor PIF1-like
TrEMBLA0A1U8LFZ60.0A0A1U8LFZ6_GOSHI; transcription factor PIF1-like
STRINGGorai.001G234900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.35e-70phytochrome interacting factor 3-like 5