PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G2005
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 309aa    MW: 34519.6 Da    PI: 7.3245
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G2005genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.3e-09163210455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gh_D07G2005 163 SHSLAERVRREKISERMKLLQDLVPGC----NKVIGKAVMLDEIIKYVQSLQ 210
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-9157214No hitNo description
SuperFamilySSF474597.85E-17157227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.294159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17160227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-6163210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-10165215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MDNQFSLNAP PFHLEPSLSA SYYLSSAMDI HATELNCSQH CEQPTDYYGL HFHFPLSSMP  60
SQVGGFQGNN NISPLQGRSK SVTSQNESLL NPNADLEASK YWNSRKRTKT VETSASPTIA  120
AKGSVRNQES DEKRSNPNTN TKPLEPPKDY IHVRARRGEA TDSHSLAERV RREKISERMK  180
LLQDLVPGCN KVIGKAVMLD EIIKYVQSLQ RQVEFLSMKL ASVNSRLDFK LDSVMSEDIF  240
QSNNNFAHPI STIDSWASAA IFGQQQQQNL ALHSNVSNGT MTQCSVQPMD TAIWPQLQHP  300
VTSNQLPLS
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6168741e-104JX616874.1 Gossypium hirsutum clone NBRI_GE61821 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012492348.10.0PREDICTED: transcription factor bHLH62-like
SwissprotQ9SRT28e-62BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A2P5R6M60.0A0A2P5R6M6_GOSBA; Uncharacterized protein
STRINGGorai.001G230000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2458634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.15e-64bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]