PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1984 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | FAR1 | ||||||||
Protein Properties | Length: 222aa MW: 25513.1 Da PI: 8.7854 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86 | 5.6e-27 | 51 | 140 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+Y eYA+++GF vr+ + ++s +g++ r++ C+k+g++ ++k + +e+++r++ r gCka++ vk+ek+gkw+vt++e+eHnH+l+ Gh_D07G1984 51 KYYIEYARRIGFMVRIMQRRRSGIDGRTLARRLGCNKQGFSPNHKGTLGQEKKPRPSAREGCKATILVKMEKTGKWVVTRFEKEHNHPLM 140 69**************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-25 | 51 | 140 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MVDVIQIKWD LDKEGGKADS SVEEKTAERE GSEILEPYVG MEFESEDDAK KYYIEYARRI 60 GFMVRIMQRR RSGIDGRTLA RRLGCNKQGF SPNHKGTLGQ EKKPRPSARE GCKATILVKM 120 EKTGKWVVTR FEKEHNHPLM ITANGFNTTG DKDKKIEELT MELAHQEQLC SAYREKLFAF 180 INNVEKQTEE LSSKIEVIVD NIRKLEAERQ RFTHRSAGSL GL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.22381 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746159.1 | 1e-160 | PREDICTED: protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A1U8P7E1 | 1e-159 | A0A1U8P7E1_GOSHI; protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A2P5R1K2 | 1e-159 | A0A2P5R1K2_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G227800.1 | 1e-158 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3918 | 28 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 1e-75 | FAR1 family protein |