PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1957
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 408aa    MW: 44509.2 Da    PI: 4.7536
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1957genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +C+ +++++ + +C+++  +lC +C  + H+       H++
  Gh_D07G1957  4 ICDFCGNQPSTVYCQSDAACLCLSCDRNVHSAnalskrHSR 44
                 7*****************************65677777765 PP
2zf-B_box23.61e-074689441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                   C++++++++   C + ++ lC++C l +H g       H++++
  Gh_D07G1957 46 LLCERCNSQPAFVRCVEERVSLCQNCDLMGH-GtstlnstHRRQT 89
                 57*****************************.5578888888765 PP
3CCT639.5e-22351394144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R  a++RYkeK+ktRkFeK++rY+sRKa+A+ R+RvKGrFvk+ 
  Gh_D07G1957 351 RSDAVMRYKEKKKTRKFEKRVRYASRKARADVRKRVKGRFVKAG 394
                  889**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.499147IPR000315B-box-type zinc finger
CDDcd000211.68E-8447No hitNo description
SMARTSM003365.6E-9447IPR000315B-box-type zinc finger
PfamPF006431.4E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501199.0154390IPR000315B-box-type zinc finger
CDDcd000212.04E-54790No hitNo description
SMARTSM003360.0994890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.418351393IPR010402CCT domain
PfamPF062032.0E-16351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCGN QPSTVYCQSD AACLCLSCDR NVHSANALSK RHSRTLLCER CNSQPAFVRC  60
VEERVSLCQN CDLMGHGTST LNSTHRRQTI NCYSGCPSSA ELSSIWSFFS QSPSAGESTC  120
EQELRQMSIT ETSWCPTENT ISQNDTGDAE VNRDYNVDRG SSWSGSPIPE LRSGPGLLDQ  180
PAGTTDTSLS ELSCPQTKCP GVCKDDLYDD FNMDEIDLNL EKYEELFGVT LNHSEELFGN  240
GGIDSLFGTK DMSATDSYQG AVAAEGSCVG LVNAIQPACS NAASADSMMS NKTDSILCFP  300
ARQDHSSFSF SGLTGESSGG DYQDCGASSM LLMGEAPWCP PSEGPFSSAT RSDAVMRYKE  360
KKKTRKFEKR VRYASRKARA DVRKRVKGRF VKAGDDYDYD PLNPTRSC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.248670.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746177.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016746178.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
RefseqXP_016746179.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9SSE51e-144COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1U8P7990.0A0A1U8P799_GOSHI; zinc finger protein CONSTANS-LIKE 9-like
STRINGGorai.001G223800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-108CONSTANS-like 9