PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1877 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 560aa MW: 60660.1 Da PI: 6.3805 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.1e-30 | 278 | 336 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ Gh_D07G1877 278 TDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTILITTYEGNHNHP 336 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-33 | 262 | 338 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.03E-27 | 270 | 338 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.792 | 272 | 338 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-36 | 277 | 337 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-26 | 279 | 336 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 560 aa Download sequence Send to blast |
MDDASTPNRS PPPPTIQFPV NLNCSNDEIP RRVIGEMDFF AEKNHKLVDG HVDDSDHANA 60 TDINDSIDRT ALELNVNTGL NLLTTNTSSD QSSVDDGISS NMEDKRAKNE LAVLQVELER 120 MNTENQQLRE MLSEVTSNYN TVQKHLVTLM QQQQDGKPEK NDEQKKSNGG LIVPRQFMDL 180 GLAAAAAAEV DTDEPSLSST EGRSHDWSGS PNVEVASKEF RSRKRGSSEE GRRIGREDSP 240 DGNKVPRFNS SKTVDQTEAT MRKARVSVRA RSEAPMITDG CQWRKYGQKM AKGNPCPRAY 300 YRCTMAAGCP VRKQVQRCAE DRTILITTYE GNHNHPLPPA AMAMASTTSS AARMLLSGSM 360 SSADGLMNSN FLTRTLLPCS SSMATISASA PFPTVTLDLT QTPNPLQFPR PEGQFQVPFP 420 NPPPHNLPNS QLSPLPLLPQ IFGQALYNQS KFSGLQMSHD IEQPQMSHQH QQGQQKSLAD 480 TVNAATAAIA ANPNFTAALA AAITSIIGSS HSNNVTNNNG ANLTSATNSN GNVTTTTTTT 540 SNSNSNGNNK ISNSSNFAAN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 264 | 340 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.26144 | 0.0 | boll |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 109830770 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF031097 | 0.0 | KF031097.1 Gossypium hirsutum WRKY transcription factor 58 (WRKY58) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012489334.1 | 0.0 | PREDICTED: probable WRKY transcription factor 31 | ||||
Swissprot | Q9C519 | 1e-144 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | A0A1U8P4A2 | 0.0 | A0A1U8P4A2_GOSHI; probable WRKY transcription factor 31 | ||||
STRING | Gorai.001G214800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1057 | 28 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-108 | WRKY family protein |