PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 260aa MW: 29177.7 Da PI: 4.7038 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67.8 | 1.4e-21 | 104 | 164 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++++l +++e++V++WFqNrRa+ k+ Gh_D07G1730 104 RQRWTPTPVQLQILERIFDQgTGTPSKQKIQEITSELsqhgQISETNVYNWFQNRRARSKR 164 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 104.1 | 9.2e-34 | 103 | 166 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++iq+it+eL+++G+i+++NV++WFQNr+aR+++kq Gh_D07G1730 103 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIQEITSELSQHGQISETNVYNWFQNRRARSKRKQ 166 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 99 | 166 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.9 | 100 | 165 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-15 | 102 | 169 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.34E-18 | 103 | 165 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.19E-14 | 104 | 166 | No hit | No description |
Pfam | PF00046 | 2.3E-19 | 104 | 164 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MIMEWEDQEN QNQREILNVN VNNGGVMYVK VMTDEQLETL REQIAVYAAI CEQLVEMHKN 60 LTAQQDLAGL SLSFPLISLY ACGRLGSLYC DPLMTSAGHK ITARQRWTPT PVQLQILERI 120 FDQGTGTPSK QKIQEITSEL SQHGQISETN VYNWFQNRRA RSKRKQLGSS SNNAESELET 180 EVESPNEKKT KPENLLSGQN PAPRAEDLCF QNPEITSELH FLGVMSNPTT FNGDEHLSGK 240 MGMPGSYNIY DQAGDYGMAG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 157 | 165 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.13163 | 0.0 | boll| ovule| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00617 | PBM | Transfer from AT4G35550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016746282.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 13-like | ||||
Swissprot | O81788 | 1e-105 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A1U8P4Y7 | 0.0 | A0A1U8P4Y7_GOSHI; WUSCHEL-related homeobox 13-like | ||||
STRING | Gorai.001G199200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4620 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-106 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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