PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1712 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 36424.8 Da PI: 5.2639 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 57 | 3.4e-18 | 37 | 86 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+e E+rRR++iN++f++Lr+++P++ ++K +Ka+ L +++eYI+ Lq Gh_D07G1712 37 RSKHSETEQRRRSKINERFQTLRDIIPQN----DQKRDKASFLLEVIEYIQFLQ 86 899*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 8.8E-24 | 32 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.511 | 35 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.39E-17 | 35 | 90 | No hit | No description |
SuperFamily | SSF47459 | 1.09E-19 | 35 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.9E-16 | 37 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-13 | 41 | 91 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MVKSVASAQL HQEEEDDDGE TVKVEGKGSE QKANSNRSKH SETEQRRRSK INERFQTLRD 60 IIPQNDQKRD KASFLLEVIE YIQFLQEKLQ IYEGSYQGWS QEATKLIPWR NHRGLAESFI 120 DHSQIMNNGS NCENDGVIPS MVANAQNSID SDLGDAAVFK TPDHPPVSAT STVSMQTQSN 180 TIATHGRGSI TFHESASDSE NMVHQPQFQS WQSRDCLSES AVVNNSAIAR EDLTIRDESV 240 DLSSAYSQGI RNSLTQVLQS SGVDISQASI SVKIDVGKRV AAGMTSTPSS SKEKDIQYTS 300 NQEMAQTGVR SYTEESDQAY KRHRTGKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.15384 | 0.0 | boll |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012486994.1 | 0.0 | PREDICTED: transcription factor BIM3-like | ||||
TrEMBL | A0A0D2Q131 | 0.0 | A0A0D2Q131_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G197500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17167 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-61 | BES1-interacting Myc-like protein 2 |