PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1698
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 437aa    MW: 47661.3 Da    PI: 7.8975
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1698genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.42.1e-124873126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C++f+rtG C yG++C+F+H+
  Gh_D07G1698 48 PGEPDCSYFLRTGSCGYGSNCRFNHP 73
                 5789*********************9 PP
2zf-CCCH36.86.5e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++Ck++H++
  Gh_D07G1698  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                  789********************96 PP
3zf-CCCH38.12.7e-12139161527
                  --SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                   C++++rtG Ck+G  CkF+H++
  Gh_D07G1698 139 SCPYYMRTGSCKFGVACKFHHPQ 161
                  6********************97 PP
4zf-CCCH37.73.5e-12279304227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ Cr+++ tGtCkyG+ Ck++H++
  Gh_D07G1698 279 DQPKCRYYMNTGTCKYGSDCKYHHPK 304
                  6789********************96 PP
5zf-CCCH32.81.1e-10324349126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  +++++C+ +a +G CkyG++C+F H+
  Gh_D07G1698 324 PGQAICSSYAMYGLCKYGPTCRFDHP 349
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.5E-74774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0424775IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-104973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-55373IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.52189117IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-689116IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-495115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6133162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.108134162IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4136161IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-10138161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5139160IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5277304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.314277305IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9279304IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-7280305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-6283304IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338323351IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6323350IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6323349IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-4328348IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MPDNRQVQNN AVSNETADKI EEAIMRLKIN DNNQEVGVSR SASYPDRPGE PDCSYFLRTG  60
SCGYGSNCRF NHPVYDAQNG QYREELPERI GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNILG LPMRQEEKSC PYYMRTGSCK FGVACKFHHP QPASPGAGLP ANAVGSSILP  180
PSGVPYAGGL PSWSLPRPPH VSGPRVQTQS YMPVVFSPSQ NTIPAHGWST YMGNMSPVSS  240
AGILGSNFAY NLMNPAESGS TEQMLLSSTS ASDFPERPDQ PKCRYYMNTG TCKYGSDCKY  300
HHPKERIANS AVNSIGPLGL PSRPGQAICS SYAMYGLCKY GPTCRFDHPY MGCPYNYGLS  360
VPLSVLDTSL LPYQRMSPTA HLSEAPLPSK LSDLAWNTDS VSKKHQNSEI KNSDDPPPQQ  420
VTSPHSLQGS SKTSHDD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.169880.0boll| ovule| root
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5805621e-58JX580562.1 Gossypium hirsutum clone NBRI_GE13012 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745839.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
TrEMBLA0A1U8P6I20.0A0A1U8P6I2_GOSHI; zinc finger CCCH domain-containing protein 3-like isoform X1
STRINGGorai.001G195600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-128C3H family protein