PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1672
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 442aa    MW: 48228.2 Da    PI: 6.6567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1672genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.12.1e-29103159259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +DgynWrKYGqK vkg+ef rsYYrCt+++C+vkk++e s+ d+k+v+++Y g+H+h 
  Gh_D07G1672 103 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCQVKKQLEYSH-DGKMVDTVYFGQHDHA 159
                  7***************************************9.***************7 PP
2WRKY105.23.3e-33274332159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ++Dgy+WrKYGqK vkg+++prsYYrC+ +gCpvkk+ver+++d k+v++tYeg+H+h+
  Gh_D07G1672 274 VNDGYRWRKYGQKLVKGNPNPRSYYRCSNPGCPVKKHVERASHDAKLVITTYEGKHDHD 332
                  58********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.27497161IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.4E-2698161IPR003657WRKY domain
SuperFamilySSF1182904.45E-24100161IPR003657WRKY domain
SMARTSM007746.4E-33102160IPR003657WRKY domain
PfamPF031069.5E-23103158IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.7E-35261334IPR003657WRKY domain
SuperFamilySSF1182904.58E-29267334IPR003657WRKY domain
PROSITE profilePS5081135.921269334IPR003657WRKY domain
SMARTSM007741.1E-38274333IPR003657WRKY domain
PfamPF031064.4E-26275331IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MVSLGECVTD EVGTDKVQSP DAGSHALQQT SDSKIQSSQS DEGRGTLALI SEENPLPISV  60
IHASQSQQQG NAYSMTSKKQ SLTPSPSPGI DGSSPIVREK ASEDGYNWRK YGQKLVKGNE  120
FVRSYYRCTH PNCQVKKQLE YSHDGKMVDT VYFGQHDHAK PLNPPVAVGF VVSVVEERLD  180
NASPTVIKDK SLGAHIQTPR LIEPGDSSQP LPIAASEDVK SKSNGMQNIA CNDDGHLISK  240
RRKKESDNVD VSPVHKPTSE SPMVIKTLSE VDIVNDGYRW RKYGQKLVKG NPNPRSYYRC  300
SNPGCPVKKH VERASHDAKL VITTYEGKHD HDLPPTRTVT YNIIGLNVDS QAHNSESGTK  360
VEERETINSS SGAENKPSEQ SNGESRTKLE VSGTVHVCTV DAPTLGPESG SNEQRSGKLD  420
HNEESEVVGY TAHSKSSSQN TE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-37104335175WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.240401e-180boll
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016746117.10.0PREDICTED: WRKY transcription factor 1-like
SwissprotQ9SI372e-93WRKY1_ARATH; WRKY transcription factor 1
TrEMBLA0A1U8P4G50.0A0A1U8P4G5_GOSHI; WRKY transcription factor 1-like
STRINGGorai.001G192900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79492639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-93zinc-dependent activator protein-1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qiao Z,Li CL,Zhang W
    WRKY1 regulates stomatal movement in drought-stressed Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 91(1-2): p. 53-65
    [PMID:26820136]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]