PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1645
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CO-like
Protein Properties Length: 408aa    MW: 44121 Da    PI: 5.0348
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1645genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.39.7e-06444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                 +C+ ++++    +C+++  +lC +C  + H+       H++
  Gh_D07G1645  4 ICDFCGDQLSMVYCRSDAACLCLSCDRNVHSAnalsrrHSR 44
                 7*******9*********************65677777766 PP
2zf-B_box20.78.6e-074689441
     zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                   C++++++++   C + ++ lC++C   +H g       H++++
  Gh_D07G1645 46 LLCERCNSQPAFVRCAEERVSLCQNCDWIGH-GastsnstHKRQT 89
                 57*****************************.5578888888776 PP
3CCT67.82.8e-23351394144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  R +a++RYkeK+ktRkF+K++rY+sRKa+A+ R+RvKGrFvk+ 
  Gh_D07G1645 351 RSNAVMRYKEKKKTRKFDKQVRYASRKATADVRKRVKGRFVKAG 394
                  899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.542147IPR000315B-box-type zinc finger
SMARTSM003364.4E-8447IPR000315B-box-type zinc finger
CDDcd000211.98E-6447No hitNo description
PROSITE profilePS501198.8164390IPR000315B-box-type zinc finger
CDDcd000218.97E-54790No hitNo description
SMARTSM003360.684890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.398351393IPR010402CCT domain
PfamPF062031.3E-17351393IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MGYICDFCGD QLSMVYCRSD AACLCLSCDR NVHSANALSR RHSRTLLCER CNSQPAFVRC  60
AEERVSLCQN CDWIGHGAST SNSTHKRQTI NCYSGCPSSS ELSSMWSFFP QSPPAGESSC  120
EQELGLMCIT ENIERTSWGA IENTINQNSA GVAEVNHDSN TDKGTGWGGT SSIPDLRSMP  180
RVLDQPPGPT GASLPKCPGI CEDALYDDFN MDEVDLNLEK YEELFGVTLN HSEELLGNGG  240
IDSLFGTKDM AAADSNCQGA LAAEGSSVGL INAIQPDCSN AASADSMMSS KTDSILCFTA  300
RQAHSSVSFS GLTGESSAGD YQDCGSSSML LMGEPSWCPP CAESSFQSAT RSNAVMRYKE  360
KKKTRKFDKQ VRYASRKATA DVRKRVKGRF VKAGDAYDYD PLNHTRSC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745875.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 9-like isoform X1
SwissprotQ9SSE51e-150COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A1U8P4610.0A0A1U8P461_GOSHI; zinc finger protein CONSTANS-LIKE 9-like isoform X1
STRINGGorai.001G190000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16822786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-137CONSTANS-like 9