PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1543 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 574aa MW: 62750.5 Da PI: 6.8576 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.1 | 9.8e-16 | 344 | 390 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K +Ka++L +A+eY+ksLq Gh_D07G1543 344 VHNLSERRRRDRINEKMRALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 390 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.7E-20 | 338 | 406 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.044 | 340 | 389 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.47E-16 | 343 | 394 | No hit | No description |
Pfam | PF00010 | 3.5E-13 | 344 | 390 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-20 | 344 | 398 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-17 | 346 | 395 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006783 | Biological Process | heme biosynthetic process | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0010100 | Biological Process | negative regulation of photomorphogenesis | ||||
GO:0010161 | Biological Process | red light signaling pathway | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0015995 | Biological Process | chlorophyll biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MNHCVPDFEM EDDDSIPCTL TRSKKPSMPE DEIMELLWQN GQVVMQSQNQ RSIKKSPPFK 60 FQGADPSATK EIWSSSSHHH HQQQQQQQQQ SLTDHHLFMQ EDEMASWLHY PLSDASFDHD 120 FCADLLYPSS AAPCLTSTTA TTSAPPPLGK VTQVSASAVA SASRPPIPPS RRNELESTRI 180 QNFVHFSRHK AVRVEQFKQS NSKSVVRELT VVDSSDTPAM APESGASQAM PCNTEAASGE 240 NDNINCANMS VAAGANTQSA GVSGSACKDN LAAYEVTVTS SPGGSGASAE PTAQKAAAAE 300 DRKRKGRELE DTEYHSEDVE SESADTKKQT RGSTSTKRSR AAEVHNLSER RRRDRINEKM 360 RALQELIPRC NKSDKASMLD EAIEYLKSLQ LQVQMMSMGC GMVPMMFPGV QQYMPTMGMG 420 IGMGMGMDIG RPTMPFTNVL AGSPLPTPAA AAHLGPRFTM RPFHMPPPAL APAPAPDPSR 480 IQPNNQSDTM LNRLGVQNPN QPCVPNFADP YQQYNIGLHP MQLSPPLNQA MAQPSSSKPS 540 TSKGADNLEN HPSGRSIVVC FTIIRRWLLT KVYT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 348 | 353 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.16686 | 0.0 | leaf| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00074 | ChIP-chip | Transfer from AT2G20180 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GQ394260 | 1e-102 | GQ394260.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS1225 SSR marker CGR6819 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016745750.1 | 0.0 | PREDICTED: transcription factor PIF1-like isoform X2 | ||||
TrEMBL | A0A1U8P3P5 | 0.0 | A0A1U8P3P5_GOSHI; transcription factor PIF1-like isoform X2 | ||||
STRING | Gorai.001G183400.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7108 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-69 | phytochrome interacting factor 3-like 5 |