PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1486
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 135aa    MW: 15383.8 Da    PI: 8.8595
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1486genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-191869256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +++g+
  Gh_D07G1486 18 RYRGIRRRP-WGKFAAEIRDPTRNG--ARLWLGTFQTAEEAARAYDRAAFAFRGH 69
                 69*******.**********98887..*************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.88E-271877No hitNo description
Gene3DG3DSA:3.30.730.101.5E-311878IPR001471AP2/ERF domain
PfamPF008472.0E-131869IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-231877IPR016177DNA-binding domain
PROSITE profilePS5103225.0011876IPR001471AP2/ERF domain
SMARTSM003802.0E-351882IPR001471AP2/ERF domain
PRINTSPR003672.0E-111930IPR001471AP2/ERF domain
PRINTSPR003672.0E-114258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MEASQEGKNR GNNNGEVRYR GIRRRPWGKF AAEIRDPTRN GARLWLGTFQ TAEEAARAYD  60
RAAFAFRGHT AILNFPNEYQ YQNPSFPPSS VSSSTYSAGR GNPQRGGANE VIEFEYLDDK  120
LLEDLLQTQD DRHRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-3151213114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745692.13e-96PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC54e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A1U8P3A76e-95A0A1U8P3A7_GOSHI; ethylene-responsive transcription factor ERF098-like
STRINGGorai.001G176700.14e-95(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]