PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1303
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 473aa    MW: 51142.1 Da    PI: 9.3053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1303genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16280327355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + hn  ErrRRd+iN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Gh_D07G1303 280 EVHNLSERRRRDKINKKMRALKELIPNC-----NKVDKASMLDEAIEYLKTLQ 327
                  57*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.6E-20274334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.63E-18275331No hitNo description
SuperFamilySSF474597.33E-21276352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.438277326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13280327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-17283332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MASDLPNVPS MRDPDFMELV WENGQVLIRG LSSKVTQKSS PFSSRSTANG SKDGGVADST  60
FAHPISGLSS LSKLDRQGVD ANIVPVNNFN RLKSSYVPKQ LVEDEVPCSS LQQFKGSKEE  120
KDRVNFSILR SNHASSGAMS TPGLAAGAED LQGNKVRSAP PMSSNIPFGN EGDFMAKRMR  180
PTLPDSEPLK ESFPDEQSEA VPNARLAPDD TAFKGNPDQM VASSSLCSRG ASNCPTYTFK  240
RRYEDTDLSK NTTMEEAEGT TKAAPVPRGS KGAKRKRKTE VHNLSERRRR DKINKKMRAL  300
KELIPNCNKV DKASMLDEAI EYLKTLQLQV QMMSIGNGVY MPPMMFPLPW AMQHINAQHL  360
GGYSPMALGM GMRMQMGLGC GAPPQFPTSL MTGAPAVPGN PEARFNMLGF PDQMLLRSMS  420
HSPFLSSAAS FTPQSVQPPA AVVSQSAAPP AAQVDLLGGA NPLSTSKDSY PTH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1275289KRKTEVHNLSERRRR
2285290ERRRRD
3286291RRRRDK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.119920.0boll| ovule| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745428.10.0PREDICTED: transcription factor PIL1-like
RefseqXP_016745430.10.0PREDICTED: transcription factor PIL1-like
TrEMBLA0A1U8P2U00.0A0A1U8P2U0_GOSHI; transcription factor PIL1-like
STRINGGorai.001G148300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.23e-39phytochrome interacting factor 3