PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G1256

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 187aa MW: 20460.2 Da PI: 9.7832

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G1256	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.9	0.00016	50	72	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F ++ L H++ H Gh_D07G1256 50 FECPFCHRVFGNSQALGGHQNAH 72 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.91E-6	47	77	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.4E-4	48	76	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.281	50	77	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	52	72	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MAESSVPTSL SSADMTPDKQ SSLKLFGFSL TDHQEEVSDK SDDFGESRKF ECPFCHRVFG 60 NSQALGGHQN AHKRERQKAR QAQFHSRQRF IAAATPVLSS HVVRSMAPRF PRGFSTNGAA 120 KFLPQLAGDC PSCPQLLPTT PPYPTRIFIG KPLHFRTAAP GSTEVSTKLP KAEIGIDLHL 180 KLSHSGC

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016747289.1	1e-136	PREDICTED: zinc finger protein JAGGED-like
TrEMBL	A0A1U8PAL4	1e-134	A0A1U8PAL4_GOSHI; zinc finger protein JAGGED-like
STRING	Gorai.001G142500.1	1e-135	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15854	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06650.1	4e-14	C2H2 family protein