PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1196 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | HB-other | ||||||||
Protein Properties | Length: 511aa MW: 57652.6 Da PI: 8.3722 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 34.9 | 2.6e-11 | 29 | 65 | 21 | 57 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++r ps e++++LA +lgLt++q++ WF+ rR k+k+ Gh_D07G1196 29 QERFPSDEMKAKLAVQLGLTQKQIFSWFCHRRLKDKR 65 5789*******************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00086 | 2.75E-9 | 20 | 66 | No hit | No description |
SMART | SM00389 | 7.7E-4 | 21 | 70 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.25E-9 | 29 | 67 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-9 | 29 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.6E-9 | 29 | 65 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 11.531 | 29 | 66 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MGDSGQVQIE EDKVSLDVNK KRAVKTPAQE RFPSDEMKAK LAVQLGLTQK QIFSWFCHRR 60 LKDKRRDDYY ANGQHDYSSG VIQDHVSGLR QDSCGSIKQG DYRYIDLREV ESRIIHGQGF 120 PAADLTYEHR SHQYPYGVQM EDPSSESSLS LHDQLFLKSG NPYDMHISAN PTQNGAIVQT 180 NSSSKSVGYK PSGYLKVKGQ SENPVITAVK RQMGRHYRED GPVLGIQFDP LPPGAFEFPS 240 SHPVNEPINI RDSRQPHCLD ISGVMKQSKP KIINEVHNTM LSFQDSYMEG ANFNTVHGSK 300 RQDWRCHHQP KYKPSFSCSN PFPDKDFPLD IYKGYADKPA ISDCKRSWMS SKLVVERMVP 360 DSCSNHPGPY GRKITNEQKI PGLHDAHHIH MDPKAKNLPK TSSFIRACSE SLGNERGPFA 420 RMEKVENVGG EWKLRKDYPV RVKIDATNEL RVAKRVDLEF PQEDFVANAS HARLRLLTNP 480 SKGPSMDVPS SFSGDETAET SLSSRIEDAY G |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 66 | RRLKDKRRD |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478278.1 | 0.0 | PREDICTED: uncharacterized protein LOC105793916 isoform X1 | ||||
TrEMBL | A0A0D2QQ39 | 0.0 | A0A0D2QQ39_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G134800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24782 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G03250.1 | 4e-57 | HB-other family protein |