PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G1196
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HB-other
Protein Properties Length: 511aa    MW: 57652.6 Da    PI: 8.3722
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G1196genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox34.92.6e-1129652157
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 ++r ps e++++LA +lgLt++q++ WF+ rR k+k+
  Gh_D07G1196 29 QERFPSDEMKAKLAVQLGLTQKQIFSWFCHRRLKDKR 65
                 5789*******************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000862.75E-92066No hitNo description
SMARTSM003897.7E-42170IPR001356Homeobox domain
SuperFamilySSF466893.25E-92967IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-92966IPR009057Homeodomain-like
PfamPF000466.6E-92965IPR001356Homeobox domain
PROSITE profilePS5007111.5312966IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MGDSGQVQIE EDKVSLDVNK KRAVKTPAQE RFPSDEMKAK LAVQLGLTQK QIFSWFCHRR  60
LKDKRRDDYY ANGQHDYSSG VIQDHVSGLR QDSCGSIKQG DYRYIDLREV ESRIIHGQGF  120
PAADLTYEHR SHQYPYGVQM EDPSSESSLS LHDQLFLKSG NPYDMHISAN PTQNGAIVQT  180
NSSSKSVGYK PSGYLKVKGQ SENPVITAVK RQMGRHYRED GPVLGIQFDP LPPGAFEFPS  240
SHPVNEPINI RDSRQPHCLD ISGVMKQSKP KIINEVHNTM LSFQDSYMEG ANFNTVHGSK  300
RQDWRCHHQP KYKPSFSCSN PFPDKDFPLD IYKGYADKPA ISDCKRSWMS SKLVVERMVP  360
DSCSNHPGPY GRKITNEQKI PGLHDAHHIH MDPKAKNLPK TSSFIRACSE SLGNERGPFA  420
RMEKVENVGG EWKLRKDYPV RVKIDATNEL RVAKRVDLEF PQEDFVANAS HARLRLLTNP  480
SKGPSMDVPS SFSGDETAET SLSSRIEDAY G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15866RRLKDKRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478278.10.0PREDICTED: uncharacterized protein LOC105793916 isoform X1
TrEMBLA0A0D2QQ390.0A0A0D2QQ39_GOSRA; Uncharacterized protein
STRINGGorai.001G134800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2478234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-57HB-other family protein