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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D07G1163 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
C2H2 |
| Protein Properties |
Length: 489aa MW: 53741.3 Da PI: 10.1097 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D07G1163 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 11.9 | 0.00069 | 121 | 143 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k + +s+ k H + +
Gh_D07G1163 121 WKCEKCSKKYAVQSDWKAHSKIC 143
58*****************9876 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 489 aa
Download sequence Send
to blast |
MLSQDGLSIP STVKGLAQAQ QPNPNPNPNP VKKKRNFPGT PGKSRCRGYS FVPKISHGDQ 60
QIPLRGHNLP WKLKQRTNKE VRKKVYICPE KTCVHHDPSR ALGDLTGIKK HFSRKHGEKK 120
WKCEKCSKKY AVQSDWKAHS KICGTREYRC DCGTLFSRKD SFITHRAFCD ALAEESARFT 180
SVSTNVNPAA ASFRNDLIHG ANNNGMHQFS SGFRPEFGGL ELVDNLNSNG QKPRLQLWLD 240
EANSQVNPFG IPSNANAFLA PKSTSFPDLG MAPMNMFGSL TTQWLGKYPE DASFAGANLN 300
MSALRHGPKQ EEENKGDLSE SITSLYSNNS LQQQNYTHMS ATALLQKAAQ MGSTRNNPAI 360
NNSGFGLMSS NTYDQNKNHV YKLFKRANDQ SDNINELVSS LSSNQATIVK DGSALDDLKS 420
SSFVRNASSK GKQGGQAVVL ASKLNNTNSN EVELSLTRDF LGVGGESSRP LLQQGLAKFA 480
SMGSIHPWS
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 71 | 83 | KLKQRTNKEVRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in roots, especially in vascular initials, cortex, endodermis, and quiescent center (QC). {ECO:0000269|PubMed:25829440}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that, together with JKD, regulates tissue boundaries and asymmetric cell division in roots by a rapid up-regulation of 'SCARECROW' (SCR), thus controlling the nuclear localization of 'SHORT-ROOT' (SHR) and restricting its action (PubMed:25829440). Confines CYCD6 expression to the cortex-endodermis initial/daughter (CEI/CEID) tissues (PubMed:25829440). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ527185 | 1e-98 | HQ527185.1 Gossypium herbaceum clone NBRI_E_EYT27PB03GHRJ2 simple sequence repeat marker, mRNA sequence. |
