PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D07G1015 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB | ||||||||
Protein Properties | Length: 469aa MW: 52905.8 Da PI: 8.4267 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.3e-17 | 154 | 200 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT +Ed +l+++vkq+G + W+ Ia+ + gR +kqc++rw+++l Gh_D07G1015 154 KGQWTDDEDRKLIRLVKQYGVRKWAQIAESLV-GRAGKQCRERWHNHL 200 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 206 | 248 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++W++eE+ +l++a+++ G++ W+ Ia+ ++ gRt++ +k++w+ Gh_D07G1015 206 KDSWSEEEERILIEAHAKVGNR-WAEIAKFIP-GRTENAIKNHWN 248 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 28.107 | 149 | 204 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 152 | 247 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-16 | 153 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-27 | 155 | 208 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 1.3E-19 | 157 | 214 | No hit | No description |
CDD | cd00167 | 2.54E-15 | 157 | 200 | No hit | No description |
SMART | SM00717 | 9.1E-18 | 205 | 253 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.601 | 205 | 255 | IPR017930 | Myb domain |
CDD | cd00167 | 3.45E-14 | 208 | 251 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 209 | 253 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MKELRGRRVA FGYGNLPCNN NYKSSLCKSS PPLSAIDRFL WGQTQSLSSH SQAAHERPYS 60 IQNNVKINKG TVLGSTADAL LRGFSFPSDA IGGYLPTQTN PEESFLDGLF VDGEILTLTD 120 DKNPNMEMKA SIKGDFPKGV VKRNKKVASA ALIKGQWTDD EDRKLIRLVK QYGVRKWAQI 180 AESLVGRAGK QCRERWHNHL RPDIKKDSWS EEEERILIEA HAKVGNRWAE IAKFIPGRTE 240 NAIKNHWNAT KRRQNSRKKN KQNDKQNGKP QSSILQDYIR SQNLNTPTNS STTSATPSSS 300 TFSENLSTQF KYFLPEPSES DDSHPLVAQT YDDELMFMQN FFANNNNTIH PSLDYSQTRN 360 QTEVFKSVHV VDHNLSKGSS TIDCTTFADT RFGFSSSIQE PNNEPRTTYL FSDLYLSRLL 420 NGATTSSFPN GDDYYNGDVN TNLLSEQASS DGRKEMDLIE MVSSCQFYP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 5e-47 | 152 | 254 | 2 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 5e-47 | 152 | 254 | 2 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00567 | DAP | Transfer from AT5G58850 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016745174.1 | 0.0 | PREDICTED: myb-like protein A | ||||
TrEMBL | A0A1U8P4N1 | 0.0 | A0A1U8P4N1_GOSHI; myb-like protein A | ||||
STRING | Gorai.001G115300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4265 | 26 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-66 | myb domain protein 119 |