PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0978
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 785aa    MW: 88595.2 Da    PI: 4.8376
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0978genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.25.5e-1134057791373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+avs++d++ a +lL++++e++sp gd +qRla+yf+++L+ar+ +s++ + +   + ++++++ ++ l+++k +  ++P+ k+  + a
  Gh_D07G0978 405 LRTLLILCAQAVSTNDHRTAGELLKQIKENSSPLGDGTQRLAHYFANGLEARMDGSGTVMQNFYMSLASKKTTAADMLKSYKGYLSACPFKKLPIFFA 502
                  5789***************************************************999888888888888888************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N++I+  +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+sg   +e++e+tg+rLa+++e+++vpfe+++++a+++e++++e++
  Gh_D07G0978 503 NKMIYYMTEKASALHIVDFGILYGFQWPVLIQHLSNRPGGPPKLRITGIELPQSGfrPTERIEATGRRLANYCERFNVPFEYKAIAAQNWENIRIEDI 600
                  ******************************************************9******************************************* PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  +++++E+laVn+ ++ ++llde+++++ +r++vLkl+++++P+++v++  + ++ns+ F++rf eal + s++fd+++++ pr++  r + E el g+
  Gh_D07G0978 601 KINSNEVLAVNSLFRFENLLDETAEVDCPRNAVLKLIRRMNPDIFVHSIINGSYNSPFFVTRFREALFHLSSVFDMFDNTSPRDEPGRLMFESELYGQ 698
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  e+vnvvaceg +r++r et+++W+ r+++aGFkp+pl+++ +++ ++ l+  + + + ++e++++l++gWk+r L++ S+W
  Gh_D07G0978 699 EAVNVVACEGPARVQRPETYKQWQIRMTRAGFKPLPLNQELMTKLRHKLKAWYHKDFVIDENNHWLLQGWKGRILYASSCW 779
                  *****************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.368379760IPR005202Transcription factor GRAS
PfamPF035141.9E-110405779IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MEPKFTEFSD YINGFSVEDL DDTLRLNSVQ YSNGTIGFEF NDPSPDPNFL NMNAAVAPSE  60
PDPVTFVQPL TVSTDGSSIS TSTGWSPEGE SLSPSDDNDS TDPVLKYITQ MLMEENMEEP  120
HMFNNYLALK DTEKSLYEVL VEPYPQTSEP QPLLNQNMEA PESNLSGSTN GYWSASIGTN  180
YGTGNYNDHQ VVGEVWESPS SLSQPPLTGD YDFQPALQQP NSQVSVNSTN SLSNPGNRTM  240
ESSISELLAQ NIFNDKESVL QFQRGFEEAS KFLPSSNQLM IGLESNVFPT GQKGKVPNDV  300
VKVGEDEREK LHEGLRGRKN HGRDLEDLEE ERSNKQSATY TDESELSEMF DKVLLYPVGQ  360
FICCNDNESV QHTENKALRQ KEQSNGSGAG KPRSKKQGKK ETVDLRTLLI LCAQAVSTND  420
HRTAGELLKQ IKENSSPLGD GTQRLAHYFA NGLEARMDGS GTVMQNFYMS LASKKTTAAD  480
MLKSYKGYLS ACPFKKLPIF FANKMIYYMT EKASALHIVD FGILYGFQWP VLIQHLSNRP  540
GGPPKLRITG IELPQSGFRP TERIEATGRR LANYCERFNV PFEYKAIAAQ NWENIRIEDI  600
KINSNEVLAV NSLFRFENLL DETAEVDCPR NAVLKLIRRM NPDIFVHSII NGSYNSPFFV  660
TRFREALFHL SSVFDMFDNT SPRDEPGRLM FESELYGQEA VNVVACEGPA RVQRPETYKQ  720
WQIRMTRAGF KPLPLNQELM TKLRHKLKAW YHKDFVIDEN NHWLLQGWKG RILYASSCWV  780
PAEES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-4641278125379Protein SCARECROW
5b3h_D4e-4641278125379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.3710.0boll| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016745060.10.0PREDICTED: scarecrow-like protein 34
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8P1R80.0A0A1U8P1R8_GOSHI; scarecrow-like protein 34
STRINGGorai.001G111600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]