PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0977

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 767aa MW: 85259.5 Da PI: 5.6951

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0977	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	380.2	2.6e-116	390	760	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 l++lL+ cA+avs +d + a++l++++++++sp+gd qRla++f+ AL+arla++++++y++l++++ts ++ l+a++++ ++P++k++ + a Gh_D07G0977 390 LRTLLILCAQAVSGDDGATAKELIKQIRQHSSPTGDGSQRLAQCFVDALEARLAGTGTHIYSSLAVKRTS---AADMLKAYQVYLSACPFMKMAIFFA 484 5789*************************************************************999...9******************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194 N++I + +e+++++H+iDf+i +G+QWpaL++ La+Rp+gpp+lRiTg++ p++g +e+++etg+rLa+++e+ +vpfefn+ va+++e++++e+L Gh_D07G0977 485 NNTIFKVAEKATTLHVIDFGIFYGFQWPALIHCLANRPGGPPKLRITGIEFPRPGfrPAEAVQETGHRLARYCERYNVPFEFNA-VAQKWETIQTEDL 581 ***************************************************99*************************.7******** PP GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292 ++++++++aVn+ ++ ++llde+v l+s+rd vL+l+++++P+++v++ + ++n++ F++rf eal ++salfd+ e+++++e++ r+++E+++ g+ Gh_D07G0977 582 KINSNDVIAVNCLFRFKNLLDETVVLNSPRDIVLNLIRKINPDIFVHSIVNGSYNAPFFVTRFREALFHFSALFDMSETNISQEDNLRSMLEQKFYGQ 679 ********************************************************************************************** PP GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ei+n+vaceg+er+er e +++W+ r +aGF+++pl+ + +k+++ +++++ ++v+ + ++++gWk+r +++ SaW Gh_D07G0977 680 EIMNIVACEGTERVERPEAYKQWQVRSVRAGFTQLPLDPELMKKVRGKVKECYHSDFMVDVDGRWMLQGWKGRIIYASSAW 760 *************************************************777*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	66.658	364	741	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.9E-114	390	760	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MGSEVNSIND FKFHNGFSMS YSNGYPKSEI SNGIISNDPS LDLSSVGAPF LPSLGLNNSS 60 TYASFFSTDK EGDSSSPSDD GDFSDTVLKY ISQVLLEEDM EEKPCMFHDS LALQAAEKSL 120 YEVLGESYPP RNRAPLCSGH SVESSPDDCS FRTSGDHSTY AGSSSNTSKS IDSRWNGDLG 180 ENNDKPSLFE ASVPDNFVFQ SSVNSFSQSS ASFQKGTANN GKGLVGSNSN ELAIPNYFSE 240 SELALHFKKG VEEASKFLPK GNQLTFDFKS NAWTAELNQK APVTVVEMES DWKEYSPHRL 300 TGKKNHDRED EDFEEGRNNK QSAVSGDESE LSDMFDKVLI CAGRNEKSPA CGADETPRNG 360 PSKLQPKEQI NGSGKARGKK QGKKKEVVDL RTLLILCAQA VSGDDGATAK ELIKQIRQHS 420 SPTGDGSQRL AQCFVDALEA RLAGTGTHIY SSLAVKRTSA ADMLKAYQVY LSACPFMKMA 480 IFFANNTIFK VAEKATTLHV IDFGIFYGFQ WPALIHCLAN RPGGPPKLRI TGIEFPRPGF 540 RPAEAVQETG HRLARYCERY NVPFEFNAVA QKWETIQTED LKINSNDVIA VNCLFRFKNL 600 LDETVVLNSP RDIVLNLIRK INPDIFVHSI VNGSYNAPFF VTRFREALFH FSALFDMSET 660 NISQEDNLRS MLEQKFYGQE IMNIVACEGT ERVERPEAYK QWQVRSVRAG FTQLPLDPEL 720 MKKVRGKVKE CYHSDFMVDV DGRWMLQGWK GRIIYASSAW VPASYPV

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MGSEVNSIND FKFHNGFSMS YSNGYPKSEI SNGIISNDPS LDLSSVGAPF LPSLGLNNSS  60
TYASFFSTDK EGDSSSPSDD GDFSDTVLKY ISQVLLEEDM EEKPCMFHDS LALQAAEKSL  120
YEVLGESYPP RNRAPLCSGH SVESSPDDCS FRTSGDHSTY AGSSSNTSKS IDSRWNGDLG  180
ENNDKPSLFE ASVPDNFVFQ SSVNSFSQSS ASFQKGTANN GKGLVGSNSN ELAIPNYFSE  240
SELALHFKKG VEEASKFLPK GNQLTFDFKS NAWTAELNQK APVTVVEMES DWKEYSPHRL  300
TGKKNHDRED EDFEEGRNNK QSAVSGDESE LSDMFDKVLI CAGRNEKSPA CGADETPRNG  360
PSKLQPKEQI NGSGKARGKK QGKKKEVVDL RTLLILCAQA VSGDDGATAK ELIKQIRQHS  420
SPTGDGSQRL AQCFVDALEA RLAGTGTHIY SSLAVKRTSA ADMLKAYQVY LSACPFMKMA  480
IFFANNTIFK VAEKATTLHV IDFGIFYGFQ WPALIHCLAN RPGGPPKLRI TGIEFPRPGF  540
RPAEAVQETG HRLARYCERY NVPFEFNAVA QKWETIQTED LKINSNDVIA VNCLFRFKNL  600
LDETVVLNSP RDIVLNLIRK INPDIFVHSI VNGSYNAPFF VTRFREALFH FSALFDMSET  660
NISQEDNLRS MLEQKFYGQE IMNIVACEGT ERVERPEAYK QWQVRSVRAG FTQLPLDPEL  720
MKKVRGKVKE CYHSDFMVDV DGRWMLQGWK GRIIYASSAW VPASYPV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	1e-53	366	764	2	381	Protein SCARECROW
5b3h_D	1e-53	366	764	2	381	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016745059.1	0.0	PREDICTED: scarecrow-like protein 33
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1U8P4B5	0.0	A0A1U8P4B5_GOSHI; scarecrow-like protein 33
STRING	Gorai.001G111500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM358	27	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]