PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0897
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 509aa    MW: 55551.2 Da    PI: 7.6276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0897genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.4e-09326373455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++i +++  L+ l+P +    +k   Ka +L + ++Y++sLq
  Gh_D07G0897 326 SHSLAERVRREKISERMKLLQNLVPGC----NKVTGKALMLDEIINYVQSLQ 373
                  8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.65E-10320377No hitNo description
SuperFamilySSF474597.07E-17320391IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.428322372IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-16322390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-6326373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.2E-10328378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MENQFFLGAQ GPPLDFGQSL SSPLSTAWQS LSSPMEIQAT ELNSTDYGLQ FESALSSMVS  60
SPVASNSNLS NESFMIRELI GKLGSIGGNS GEISPQPLIA NSTNTSCYST PLNSPPKLSL  120
PLNTLVKEKL PRLGKSMGMN SSVTDFSADP GFAERAAKFS CFGSRSFNGR TSQLGLNDTS  180
SPSPSLSPYR SNPLSSNRKI PRVSSSPSLN AMVVIEPLQD RSELSHSQEE SSITNGDPSL  240
KPSKGTNSRK RKTVPKAKTN EISTSPSTNA PKGTESNEKR CKSTESNGNQ NDSIKTEDDA  300
KGNTKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQNLVP GCNKVTGKAL  360
MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFNMDGLMPK EMFESNNSLA HQIFPMDSSA  420
TAIFEQQNPA LHHHHANMSN GTMSQCLVGQ LDTSIHPNLN THLPQIHHFT PSMPQYPAFC  480
EGDLQTIVEM GLGQNQSREM ALQSEFQGK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247252SRKRKT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.226222e-83boll
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744927.10.0PREDICTED: transcription factor bHLH62-like
TrEMBLA0A1U8P1380.0A0A1U8P138_GOSHI; transcription factor bHLH62-like
TrEMBLA0A2P5RRV50.0A0A2P5RRV5_GOSBA; Uncharacterized protein
STRINGGorai.001G103300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-103bHLH family protein