PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0868
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 528aa    MW: 58770 Da    PI: 5.5894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0868genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07465519146
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+eE++ l+++v+++ +       W++I  +       +R + ++k++w +
      Gh_D07G0868 465 RLHWTAEEEDMLKELVHKFSSQvnkniPWRKILDHGRpvfhSTRIPVDLKDKWKN 519
                      789********************************99****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.13E-6118173IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.8E-6119174IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002491.4E-4122168IPR001965Zinc finger, PHD-type
PROSITE patternPS013590123167IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5129410.524460525IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.3E-10461528IPR009057Homeodomain-like
SuperFamilySSF466893.51E-8463522IPR009057Homeodomain-like
SMARTSM007172.3E-5464523IPR001005SANT/Myb domain
PfamPF002493.7E-6466520IPR001005SANT/Myb domain
CDDcd116604.30E-8468521No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGRKVGVVKS GVRNSIPSSN PSTFSLPLRC QHEGDEDRHV DGKNHGAYED TGSGQDKDNN  60
SSGDANADAD GMGNCNVNGD ALVNVDDKVN DRDEEKGDDD VARCVRGKHA DCIVVDWLNG  120
EYCFECNSGS GQVLVCSENG CPVALHEACM TWRPIFDDMG KFYCPYCLYK KEVARFKDLT  180
TEAMLARKEL SNFICLRRDS RNKEREGETV SMKGASVSTM AREVGCGDCR NGLNDDGKET  240
RHRSQDETRG VDVIRKEQSN EQNISRAHGF GNVGNGEMME EVEEDSSDSG GDDIGEGRQQ  300
KQPSSSSGVG TVEETQGVDV IRKEQSNEQN ISRGHGFENV GNREMMEEDI EISSDSGNAE  360
IGDDRRELRP SSSKVPVIES FEFVSRNLDA ETLVTHQKRD KQRANKAQPL KVVSPEKSSL  420
QPSTSAKNMN VNQERKTVAV KISEERAKST KRSLLPVLGT EKRRRLHWTA EEEDMLKELV  480
HKFSSQVNKN IPWRKILDHG RPVFHSTRIP VDLKDKWKNI VAKEISKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1461465KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744952.10.0PREDICTED: uncharacterized protein LOC107954016 isoform X1
TrEMBLA0A1U8P1620.0A0A1U8P162_GOSHI; uncharacterized protein LOC107954016 isoform X1
STRINGGorai.001G100000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1539557