PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0845
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 440aa    MW: 47971.4 Da    PI: 8.1533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0845genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.3e-124873126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ++++ C++++rtG C yG++C+F+H+
  Gh_D07G0845 48 PGEPDCSYYLRTGSCGYGSNCRFNHP 73
                 5789*********************8 PP
2zf-CCCH36.86.5e-1292116327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C +f++tGtCkyG++Ck++H++
  Gh_D07G0845  92 QPDCGYFLKTGTCKYGSTCKYHHPK 116
                  789********************96 PP
3zf-CCCH38.32.2e-12139162427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++f+rtG Ck+G  CkF+H++
  Gh_D07G0845 139 KSCPYFMRTGSCKFGVACKFHHPQ 162
                  66********************97 PP
4zf-CCCH39.59.1e-13281306227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++Cr+++ tGtCkyG+ Ck++H++
  Gh_D07G0845 281 DQPECRYYMNTGTCKYGSDCKYHHPK 306
                  689*********************96 PP
5zf-CCCH26.21.4e-08326351126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ++++ C+ +  +G Ck+G++C+F H+
  Gh_D07G0845 326 PGQPVCSSYTMYGLCKHGPTCRFDHP 351
                  5789*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.2E-64774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9484775IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-94973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-55373IPR000571Zinc finger, CCCH-type
SMARTSM003569.7E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.71889117IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-693117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-495115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.286135163IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5137162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.1E-6137163IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-10138162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5140161IPR000571Zinc finger, CCCH-type
SMARTSM003568.1E-6279306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.549279307IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-7282308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-6285306IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-5325352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5325351IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.99325353IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5327351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPDNRQIQNN VVSNQSADSI EEAILRLKIN DNNQEVGVSK SVSYPDRPGE PDCSYYLRTG  60
SCGYGSNCRF NHPAYDAQAG QYREELPERV GQPDCGYFLK TGTCKYGSTC KYHHPKDRNG  120
AGPVTFNTLG LPMRQQDEKS CPYFMRTGSC KFGVACKFHH PQPASAGTGL PVNGPAGSSV  180
LPPTGVPYAG GLPAWSLPRA PFVSGPRLQT QSYMPVVVSP SQNIIPGNGW NTYMGNMSPA  240
SSAGILGSNY AYNSMNPAES GSSGQMLFSS APASNFPERP DQPECRYYMN TGTCKYGSDC  300
KYHHPKERIS NSAMSSVGPL GLPSRPGQPV CSSYTMYGLC KHGPTCRFDH PYMGYPYNYA  360
LSYPLSIFDT SLLTYQRMTP PPNLSEAPLP SRVPDWARNT DPASKKHQKL ETKSSDDSSE  420
QVVSPPHSLQ SSSKTSHDQN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.169880.0boll| ovule| root
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744987.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1
SwissprotQ94AD91e-128C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1U8P1930.0A0A1U8P193_GOSHI; zinc finger CCCH domain-containing protein 3-like isoform X1
STRINGGorai.001G097100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-130C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]