PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0802
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 334aa    MW: 38644.4 Da    PI: 8.4637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0802genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.97.4e-48191672128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                   pGfrFhPtdeelv +yL++kve+k++++ e ik++diy+++PwdLpk  + +ekewyf++kr +ky+++ r+nr+t sg+Wkatg dk+++s+++++
  Gh_D07G0802  19 LPGFRFHPTDEELVGFYLRRKVEKKPISI-ELIKQIDIYQYDPWDLPKVSNVGEKEWYFYCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSSSTKE 115
                  59***************************.89***************8888899***************************************84433 PP

          NAM 100 .......................vglkktLvfykgrapkgektdWvmheyrl 128
                                         +glkk+Lv+y+g a +g+ktdW+mhe+rl
  Gh_D07G0802 116 phhhhhhyhhqhdrhqhqhlctcIGLKKSLVYYRGCAGRGTKTDWMMHEFRL 167
                  566667778888899999********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100548.76418191IPR003441NAC domain
SuperFamilySSF1019415.1E-5019190IPR003441NAC domain
PfamPF023653.4E-2420167IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005992Biological Processtrehalose biosynthetic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006561Biological Processproline biosynthetic process
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010120Biological Processcamalexin biosynthetic process
GO:0042538Biological Processhyperosmotic salinity response
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MENSIDDNKK KRDEEEIKLP GFRFHPTDEE LVGFYLRRKV EKKPISIELI KQIDIYQYDP  60
WDLPKVSNVG EKEWYFYCKR GRKYRNSIRP NRVTGSGFWK ATGIDKPIYS SSTKEPHHHH  120
HHYHHQHDRH QHQHLCTCIG LKKSLVYYRG CAGRGTKTDW MMHEFRLPPN GNHTTKAQEA  180
EVWTLCRIFK RTPPNNKYPP TTVASTAAWK FSATTTIKQN GTDSPTTCCS SLEDVCQSQN  240
SYDKCKSLCD TIIQQKGNKP DMSKDQVDAR NYFLYGGTLP LSTQQAPFTA TNFPTFCNHP  300
SGDVDVFSNG NWDELRPVVE VALEPYTSHA FDYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-462019119165NO APICAL MERISTEM PROTEIN
1ut4_B4e-462019119165NO APICAL MERISTEM PROTEIN
1ut7_A4e-462019119165NO APICAL MERISTEM PROTEIN
1ut7_B4e-462019119165NO APICAL MERISTEM PROTEIN
3swm_A3e-462019122168NAC domain-containing protein 19
3swm_B3e-462019122168NAC domain-containing protein 19
3swm_C3e-462019122168NAC domain-containing protein 19
3swm_D3e-462019122168NAC domain-containing protein 19
3swp_A3e-462019122168NAC domain-containing protein 19
3swp_B3e-462019122168NAC domain-containing protein 19
3swp_C3e-462019122168NAC domain-containing protein 19
3swp_D3e-462019122168NAC domain-containing protein 19
4dul_A4e-462019119165NAC domain-containing protein 19
4dul_B4e-462019119165NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00310DAPTransfer from AT2G43000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012472284.10.0PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1
TrEMBLA0A0D2QMS20.0A0A0D2QMS2_GOSRA; Uncharacterized protein
STRINGGorai.001G091900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30628200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-88NAC domain containing protein 42