PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0698
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 439aa    MW: 48399.5 Da    PI: 9.3977
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0698genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.5e-16238283555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L++l+P+a      K +Ka++L +++eY+k+Lq
  Gh_D07G0698 238 HNLSERKRRDRINQKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 283
                  9************************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.27E-19231294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.695233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-19238291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-13238283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-16238287No hitNo description
SMARTSM003531.2E-17239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MRARLTNGNY PNRVPNWNLK NQRRRRQQVE DEEETKRSSF HMFNPCNNIN QQLVPVSNHQ  60
VAELTWQYGQ QLAMHGFSGF LPTAPTKPTC RSNDTLESIV HQATYHNQDE TPANTSSIAA  120
SSGGNRSESS SRLPPVSVAA RLTKKRAQPT SDSDQCRKHN ISCGIQKDKA DRSECGCDTF  180
YKIDNDATMV TWGSHDESLQ SLKTKTTDGD SGSHDGSESR DETGGSHPTR RSRAAAIHNL  240
SERKRRDRIN QKMKALQKLV PNASKTDKAS MLDEVIEYLK QLQAQVQVMS MRSIPPMMMM  300
PLGLQHHQHL QMSLLGRIMA GMGVNHALGM GMGLVDINAA TPPNASQSLP PLLHLPPPFL  360
ATALPPMIPS RATATAAAQS NPNASSSDSI PLPDPSCAFL TQSMNMELYS KMVALYQAQM  420
NRTTETASSP SRSNNIKQD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13441TKRSSFHM
2241246ERKRRD
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5804143e-68JX580414.1 Gossypium hirsutum clone NBRI_GE12836 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016744269.10.0PREDICTED: transcription factor UNE10-like
TrEMBLA0A1U8P2330.0A0A1U8P233_GOSHI; transcription factor UNE10-like
STRINGGorai.001G078500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39192451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.15e-34bHLH family protein