PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Gh_D07G0544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 443aa MW: 49633.1 Da PI: 5.4639 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 31.7 | 2.6e-10 | 107 | 129 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G +CkF+H+ Gh_D07G0544 107 EDCAYYMKTGLCKFGFNCKFNHP 129 89********************9 PP | |||||||
2 | zf-CCCH | 30.5 | 6.2e-10 | 150 | 173 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ Gh_D07G0544 150 QECKYYLRTGGCKFGKACRYNHSK 173 58********************95 PP | |||||||
3 | zf-CCCH | 39.2 | 1.1e-12 | 194 | 218 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ Gh_D07G0544 194 GEKECPYYMRNGSCKYGANCRFNHP 218 6789********************9 PP | |||||||
4 | zf-CCCH | 25.4 | 2.5e-08 | 331 | 356 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++f++tG Ck+ ++Ck++H++ Gh_D07G0544 331 GQTECSYFLKTGDCKFKSNCKYHHPK 356 6789********************96 PP | |||||||
5 | zf-CCCH | 37 | 5.6e-12 | 377 | 401 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ Gh_D07G0544 377 DQSICSYYSRYGICKFGPACKFDHS 401 6789********************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 2.49E-6 | 101 | 131 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2E-4 | 103 | 130 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 103 | 131 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.5E-8 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-4 | 109 | 128 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.0E-4 | 146 | 173 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.925 | 146 | 174 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 8.24E-6 | 148 | 174 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-7 | 150 | 173 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-4 | 152 | 173 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.7E-6 | 192 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.201 | 192 | 220 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.3E-10 | 194 | 218 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.28E-6 | 195 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.2E-5 | 198 | 217 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-4 | 329 | 356 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.854 | 329 | 357 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.4E-6 | 331 | 356 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-5 | 332 | 358 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.58E-6 | 373 | 401 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.6E-4 | 375 | 402 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.53 | 375 | 403 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.8E-9 | 377 | 401 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 379 | 402 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 443 aa Download sequence Send to blast |
MSQSEETTHT DSALLSLGLN STDPTPIPLD ESPSDLNHSV KETDHHENNL EQQLNNLDLK 60 EEEEEKDDVE TQNDVEEEED IIENENDDDV KKDEERRTIY PVRPEAEDCA YYMKTGLCKF 120 GFNCKFNHPV RRKNQAVKEK DESTEKTNQQ ECKYYLRTGG CKFGKACRYN HSKQNSSVSP 180 ILELNFLGLP IRKGEKECPY YMRNGSCKYG ANCRFNHPDP KLAGACEPPS GYSNGGSVSL 240 QAASLVNMPS WSAPMTLNDS AAYLPIMFSP TQGVPPPNPE WNGYQTTLYP PLERGLHPTP 300 AYVMSNPSTE TTAYTHHQPQ MVVDDFPERP GQTECSYFLK TGDCKFKSNC KYHHPKNRVP 360 KPTPCALSDK GLPLRPDQSI CSYYSRYGIC KFGPACKFDH SIQATPPTVS GLDQPRPLSH 420 STATEQAGIA RSNRADTAVQ QSV |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012468545.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 67-like | ||||
Swissprot | Q9STM4 | 1e-133 | C3H43_ARATH; Zinc finger CCCH domain-containing protein 43 | ||||
TrEMBL | A0A0D2QLD4 | 0.0 | A0A0D2QLD4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.001G061800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4176 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-131 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|