PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D07G0411

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 335aa MW: 39150.9 Da PI: 6.9271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D07G0411	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	179.7	7.3e-56	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv +yL+kk+++++++l +vi++vd+yk+ePwdL++ ++ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk+++s Gh_D07G0411 7 VPPGFRFHPTDEELVAYYLRKKITSRRIDL-DVIRDVDLYKIEPWDLQElcRIGTeEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYS- 102 69**************************.9***********954555442556**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Gh_D07G0411 103 KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-62	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	60.125	7	156	IPR003441	NAC domain
Pfam	PF02365	8.9E-29	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MNAFSQVPPG FRFHPTDEEL VAYYLRKKIT SRRIDLDVIR DVDLYKIEPW DLQELCRIGT 60 EEQNEWYFFS HKDKKYPTGT RTNRATAAGF WKATGRDKAI YSKHDLIGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETDEN GTPQEEGWVV CRVFKKRIPA INKVSEYESP CWYDDQVSFN 180 PDLASPMQNM AYHHLPYSCK KELDLQYQAP NEHYLQLPLL DSPKLLHPPV EAFGLDINNA 240 STLQETHEQH LQTLYANTNN EHAADQVTDW RILDKFVASQ LSREEVAKQN NYSSASAKNV 300 FHSSQHANLL IRHFNKQEMV PENASTSNRH TDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-50	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-50	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-50	7	160	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-50	7	160	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	7e-50	7	160	20	172	NAC domain-containing protein 19
3swm_B	7e-50	7	160	20	172	NAC domain-containing protein 19
3swm_C	7e-50	7	160	20	172	NAC domain-containing protein 19
3swm_D	7e-50	7	160	20	172	NAC domain-containing protein 19
3swp_A	7e-50	7	160	20	172	NAC domain-containing protein 19
3swp_B	7e-50	7	160	20	172	NAC domain-containing protein 19
3swp_C	7e-50	7	160	20	172	NAC domain-containing protein 19
3swp_D	7e-50	7	160	20	172	NAC domain-containing protein 19
4dul_A	6e-50	7	160	17	169	NAC domain-containing protein 19
4dul_B	6e-50	7	160	17	169	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.
Uniprot	TISSUE SPECIFICITY: Expressed in root, shoot and hypocotyl vascular elements, columella root caps, epidermal and cortex root cells and root-hypocotyl junctions. Observed predominantly in root imature xylem vessels (PubMed:18445131). Present in root developing xylems (PubMed:16103214, PubMed:17565617). Specifically expressed in vessels in the secondary xylem of the root-hypocotyl region, and in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:17565617, ECO:0000269\|PubMed:18445131, ECO:0000269\|PubMed:25148240}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC847206	0.0	KC847206.1 Gossypium hirsutum NAC domain protein NAC29 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016744501.1	0.0	PREDICTED: NAC domain-containing protein 7-like isoform X2
Swissprot	Q9FWX2	1e-133	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A1U8NZW1	0.0	A0A1U8NZW1_GOSHI; NAC domain-containing protein 7-like isoform X2
STRING	Gorai.001G048200.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2111	26	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-109	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]