PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0310
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 271aa    MW: 29542 Da    PI: 9.525
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0310genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002282104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++C + F ++  L  H++ H
  Gh_D07G0310  82 FSCNYCQRKFYSSQALGGHQNAH 104
                  89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.31E-679109No hitNo description
PROSITE profilePS5015711.42782109IPR007087Zinc finger, C2H2
PROSITE patternPS00028084104IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MESVRKEPSP SESTSCVISA PDAPSISDEQ LKKPKPRLQL DLKLSTSDSD VPAFNFNQEL  60
NLIGSLNTPE TPQPADSEQR VFSCNYCQRK FYSSQALGGH QNAHKRERTL AKRAQRIGVH  120
AAFGGHPYFH HNHCSSLASF PLQGLHNRSL GIEVHSSMIH EPSRMISSSA GFGNVYGHLS  180
WSRLPINQQP AIGKLSTENS HAISRPGSTS RASLGRFDNV MRSRMMGLGS SADDGQVIGT  240
SWWSNGGGGG GSLNRKTELQ EVHKVDLSLK L
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6148011e-152JX614801.1 Gossypium hirsutum clone NBRI_GE58454 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449746.10.0PREDICTED: zinc finger protein 3 isoform X1
TrEMBLA0A1U8P3580.0A0A1U8P358_GOSHI; zinc finger protein 3 isoform X1
STRINGGorai.001G036700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18932771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-51C2H2 family protein