PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0141
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 487aa    MW: 52054.1 Da    PI: 4.7924
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0141genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11253298555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h+++Er RR++i +++ +L+el+P++      K +Ka++L   +eY+k Lq
  Gh_D07G0141 253 HSIAERLRREKIAERMKNLQELVPNS-----NKTDKASMLDSIIEYVKFLQ 298
                  99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.31E-16246308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.94E-12246302No hitNo description
PROSITE profilePS5088816.787248297IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-16250307IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.6E-9253298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-13254303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MDDYLDQYFS SLSWSDVNFK ERSPWVLSEA DQPNALLPSS PISMIGSNHG MECLTTQSTP  60
LGVGPQTNGE SLGLQFNAGV HSSGSLKGLQ VVGDMTTLSQ SFNEGGNVIC NGGESSEFQR  120
SLTGLETLCS IPQLWHPQPY DGLISSLPMG QTRMQSSSLQ GDNGNVDDGN INRFVEIDKF  180
LQLENLSASI NAKEKQDMQN SCYSSFPADR PMTDMMIDLP SLLQSSSPAP NKGCNGTGKP  240
QVRARRGQAT DPHSIAERLR REKIAERMKN LQELVPNSNK TDKASMLDSI IEYVKFLQLQ  300
VKVLSMSRLG AAGAVVPLIT DGQAEGSNGL TLTPLAMGSD GVDCSPSPEQ VVFEQEVVKL  360
MESNVTIAMQ YLQSKGLCIM PVALAAAISN GKASSSSSSG PVSEERKKFG FTNSVISNDD  420
RVHNTTTCSS SSDSGVRNSN SSNSSGTGNL SGVGIHQSTS DGNFMIEKIN GCNGTFKQEV  480
NTLCTAK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016731509.10.0PREDICTED: uncharacterized protein LOC107942368 isoform X1
RefseqXP_016731510.10.0PREDICTED: uncharacterized protein LOC107942368 isoform X1
TrEMBLA0A1U8N1070.0A0A1U8N107_GOSHI; uncharacterized protein LOC107942368 isoform X1
STRINGGorai.001G017900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.11e-58LJRHL1-like 3