PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D07G0072
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 384aa    MW: 41975.9 Da    PI: 8.7788
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D07G0072genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000522262641255
                  HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  Gh_D07G0072 226 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 264
                  6677889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.49214263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-6224268No hitNo description
SuperFamilySSF474596.15E-10224274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-7228270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MNQGALQSSP VQQLMAGNPD WWSINAAMRP PSTHHHHHQQ TASPFFPFPP PQPPPPPAAA  60
ATAATFFPQL IPTSTSSSSS WHDNNNQEVP EPWSQLLLGG LVGEEQATAL QHQASTGNNN  120
IMKQENYVYG HANEDYHHHH HHYQGSKATT NWSMATASSS PKSCVTTSFN NNMLDFSSNI  180
KADTATRQHP PLMDPSPECN SSTASGGALK KTRVQPSATQ STFKVRKEKL GDRITALHQL  240
VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL SLPYLGSDGS SGNMRQQQQS VQGERNCIFP  300
EDPGQLLNEK CMKKRKGSPA DLQDSNEEPK KNLKSRGLCL VPISCTLQVG SDNGADYWAP  360
PSLGFLGKAI AKHTLKEKKK QQKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.102910.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5272611e-163HQ527261.1 Gossypium herbaceum clone NBRI_D_4733 simple sequence repeat marker, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016720637.10.0PREDICTED: transcription factor bHLH68-like
SwissprotQ8S3D18e-92BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A1U8M1G20.0A0A1U8M1G2_GOSHI; transcription factor bHLH68-like
STRINGGorai.001G007000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18722851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-82bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]