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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Gh_D07G0029 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
G2-like |
| Protein Properties |
Length: 441aa MW: 48674.1 Da PI: 7.0893 |
| Description |
G2-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gh_D07G0029 | genome | NAU-NBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 101.5 | 5.5e-32 | 233 | 288 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+
Gh_D07G0029 233 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 288
68****************************************************97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 441 aa
Download sequence Send
to blast |
MASSSSSELT LDCKPHGHFA APSKCYADQQ QIVVVNHTLK LEDYLSRLEE ERLKIDAFKR 60
ELPLCMQLLT NALESSRQQL QAYRANQGPK PVLEEFMPLK TSVSENMDKF QTISDHKANW 120
MTTAQLWSQA GHYETKPQSS SITTSSPKDT DIGLNVVSPK LGSSLDSKQR IGGAFLPFSK 180
DRNSCSTALP DLSLASSDTE NGTSCQQRDD GTSNNRTDGQ TTNGSNTNQP HRKARRCWSP 240
DLHRRFVNAL QMLGGSQVAT PKQIRELMKV DGLTNDEVKS HLQKYRLHTR RPSPIPQAAG 300
APTPQLVVLG GIWVPPEYAT AAHSGDPALY GAHHHHHPAV PHAPPHFCAS PVPQEFYTTA 360
ATPALPPPHH TFQHQLHNMY NARNSPEPDV REAGDRSESI EDGKSESGSW KGESCGDQRI 420
GLAALREEGE ESNRSEITLK F
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 6j4k_A | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_A | 7e-14 | 233 | 286 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_B | 7e-14 | 233 | 286 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_C | 7e-14 | 233 | 286 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4r_D | 7e-14 | 233 | 286 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 6e-14 | 233 | 286 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed 3 days after germination, with a gradual decrease before the floral transition and remains at low levels afterward. {ECO:0000269|PubMed:25132385}. |
| Uniprot | TISSUE SPECIFICITY: Specifically expressed in vascular tissues of cotyledons, rosette leaves and cauline leaves. Not detected in the vegetative shoot apical meristem. {ECO:0000269|PubMed:25132385}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX615064 | 0.0 | JX615064.1 Gossypium hirsutum clone NBRI_GE58863 microsatellite sequence. |
