PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G2166 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 228aa MW: 24773.6 Da PI: 10.0254 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 3.8e-20 | 21 | 70 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++GVr ++ +gr++AeIrdp gk+ r++lg+f+taeeAa+a++aa+++++g+ Gh_D06G2166 21 FRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 70 89******.**********8...557*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.7E-22 | 20 | 78 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.854 | 20 | 77 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.5E-37 | 20 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.19E-18 | 21 | 77 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.9E-32 | 21 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 21 | 32 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-13 | 21 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAPRDKTAAV NGNGSCKEVY FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY 60 DAAAREFRGA KAKTNFPLPF ENFNNGNKIN SKSPSQGSTV ESSSREPTLV IESSPLDLNL 120 GRGTSTGFGS PAFRFPSQKV SPVSGIFTAG GGVPVVASNQ VFYLDAFFRP GLVKGQQYQW 180 MRFDHQDFNT ASFNGGVQSD SDSSSVVDVN PRPLLNIDLN KPALPEIA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-20 | 16 | 78 | 1 | 64 | ATERF1 |
3gcc_A | 2e-20 | 16 | 78 | 1 | 64 | ATERF1 |
5wx9_A | 2e-20 | 21 | 80 | 15 | 75 | Ethylene-responsive transcription factor ERF096 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449737.1 | 1e-165 | PREDICTED: ethylene-responsive transcription factor 4-like | ||||
TrEMBL | A0A0D2VFC7 | 1e-163 | A0A0D2VFC7_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G256600.1 | 1e-164 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15210.1 | 2e-27 | ethylene responsive element binding factor 4 |