PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2163

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1772aa MW: 200701 Da PI: 5.1254

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2163	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r+eL++klgL++rq ++WF+ rR kekk Gh_D06G2163 29 PKRQMKTPFQLEALEKAYALETYPSEATRAELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.19E-17	18	85	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.795	25	85	IPR001356	Homeobox domain
SMART	SM00389	9.5E-19	27	89	IPR001356	Homeobox domain
Pfam	PF00046	9.9E-17	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.72E-14	30	86	No hit	No description
PROSITE profile	PS50827	16.609	538	597	IPR018501	DDT domain
SMART	SM00571	8.3E-21	538	597	IPR018501	DDT domain
Pfam	PF02791	1.7E-16	539	594	IPR018501	DDT domain
Pfam	PF05066	4.3E-15	745	812	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	3.1E-8	964	1008	IPR028942	WHIM1 domain
Pfam	PF15613	8.3E-13	1149	1221	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1772 aa Download sequence Send to blast
MEAGSEGENN RISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS 120 GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS 240 DAYGLVTQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH 300 VADDSFAERE SFTNGRNAPT ICNPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA 360 REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE 420 QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE 480 QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN 540 VGNLLMAWRF LITFADILKL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR 600 TPATGLGMNQ YCAANPEGGH LQIVEGVSGI IGFSCYLFSL LLNHFSFGVC QAYSWGFDIR 660 NWLHHLNPLT WPEIFRQLAI SAGFGPQLKK QNATWTYTGD NDEGKGCTDV VSTLRNGSAA 720 ENAFALMREK GLLLPRRSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL 780 TTSKTPEASI SVALTRDAKL FERIAPSTYC VRPAYRKDPA DVEAILATAR KKIRQFENGF 840 LGAEDADEVE RDEVERDDVE RDEDSECDVD EDPEVDDIAT PSNANKDADY PKDEVNTCLG 900 SKKVLASADD DLDVPAEFDK DFRSFPSNTV KVDNDPSNTG QYVAGEENGT GNPDQQNIEI 960 DESKSGESWI QGLSEGEYSH LSVEERLNAL VALIGIANEG NSIRAVLEDR LEAANALKKQ 1020 MWAEAQLDKS RLKEECIIKM DFPPVMGIKT EAQLPNSAVE GSRSPFPVAD NKIDEASPSI 1080 PEDQKPLLCS QNVQNDLNSY PAERALVLQD ASMGPDNFSA QQHGYASKRS RSQLKSYIAH 1140 RAEEMYVYRS LPLGQDRRRN RYWQFVASAS KNDPCSGRIF VELHDGNWRL IDSEEAFDAL 1200 LASLDVRGIR ESHLRIMLQK IESSFKENVR RNLHSARAMG QSGSSSENEV SEIDSSPDFT 1260 GSYDSPRSGI CGLNSDALET LPAFKIQLGR NENERKSAMK RYQDFQRWMW NECYNSSTLC 1320 AMKYEKKRST QLLAVCDTCL GSHMPEDVHC SYCHQTFRAF NNNFSFYEHE ILCKENRKLD 1380 NKDKHTLDSS LPMGINLLKS FCALVEVSIP PEALDSMWTE GQRKMWGRKL NASSSANELL 1440 KLLTQLESAI KRDYLSSNFE TTRELFGSSF QSGNDSSTDS VLPWIPQITP AVALRLLELD 1500 SSIMYVKQEK VEPPENREAR ASYIKLPSRT TLFIKNKELE LKELDQDEPM KEENFADLSN 1560 SKRSSYKRGR GAREQGSGRK WQRKASGSKS DIGKQSAREN NNLSFHLKQQ SQRTGQSSGR 1620 GRRTVRKRAE RRVANSTIVT QMGDMVKPKS NTVSLRDLDE EWRTERFGMV ETVNPPDSNS 1680 TEEESDDNGQ GEGYEQGNWE LDLNGASNGW NREPTEASYE DDDAYEDDNG FEQMVEEESE 1740 GDLEMSDASD DVPNETRNDD GSDSADSEDY SD

Sequence ? help Back to Top

Protein Sequence Length: 1772 aa Download sequence Send to blast

MEAGSEGENN RISNPNKNIS SSNEGNAKPK RQMKTPFQLE ALEKAYALET YPSEATRAEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDNPTKK QRKGAALPPE SPVDELRAVP GPDYGSGSGS  120
GSSPYMDTRK LGGSSSRGMM EDAPTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GIEFDPLPPD AFGAIPEPHN RTGHPYESKV YERHDGRSSK AAARAFHEYQ FLPEHSSIRS  240
DAYGLVTQSH FHESPVSGSR GRATSFVHGE EPLSRIHGIQ GQGSRALVLP QQGIIPSSSH  300
VADDSFAERE SFTNGRNAPT ICNPVLGSED SYMLSAEQTL NNDAEPRIDR KRKSDENRIA  360
REVEAHENRI RKELEKLEHK RRKSEERMRK EMERHERERR KEEERLMREK QREEERTQRE  420
QKREMERRQK FLQKEYLRAE KKRQKEELRR EREEERRRVA REKATARKIA KESMDLLEDE  480
QLELMELAAA RKGMHSIIHL DHDTLQNLES FRDSLSVFPP KSVQLKRPFD IQPWIDSEEN  540
VGNLLMAWRF LITFADILKL WPFTLDEFVQ AFHDYDSRLL GEIHVALLRS IIKDIEDVAR  600
TPATGLGMNQ YCAANPEGGH LQIVEGVSGI IGFSCYLFSL LLNHFSFGVC QAYSWGFDIR  660
NWLHHLNPLT WPEIFRQLAI SAGFGPQLKK QNATWTYTGD NDEGKGCTDV VSTLRNGSAA  720
ENAFALMREK GLLLPRRSRH RLTPGTVKFA AFHVLSLEGS KGLTVLELAD KIQKSGLRDL  780
TTSKTPEASI SVALTRDAKL FERIAPSTYC VRPAYRKDPA DVEAILATAR KKIRQFENGF  840
LGAEDADEVE RDEVERDDVE RDEDSECDVD EDPEVDDIAT PSNANKDADY PKDEVNTCLG  900
SKKVLASADD DLDVPAEFDK DFRSFPSNTV KVDNDPSNTG QYVAGEENGT GNPDQQNIEI  960
DESKSGESWI QGLSEGEYSH LSVEERLNAL VALIGIANEG NSIRAVLEDR LEAANALKKQ  1020
MWAEAQLDKS RLKEECIIKM DFPPVMGIKT EAQLPNSAVE GSRSPFPVAD NKIDEASPSI  1080
PEDQKPLLCS QNVQNDLNSY PAERALVLQD ASMGPDNFSA QQHGYASKRS RSQLKSYIAH  1140
RAEEMYVYRS LPLGQDRRRN RYWQFVASAS KNDPCSGRIF VELHDGNWRL IDSEEAFDAL  1200
LASLDVRGIR ESHLRIMLQK IESSFKENVR RNLHSARAMG QSGSSSENEV SEIDSSPDFT  1260
GSYDSPRSGI CGLNSDALET LPAFKIQLGR NENERKSAMK RYQDFQRWMW NECYNSSTLC  1320
AMKYEKKRST QLLAVCDTCL GSHMPEDVHC SYCHQTFRAF NNNFSFYEHE ILCKENRKLD  1380
NKDKHTLDSS LPMGINLLKS FCALVEVSIP PEALDSMWTE GQRKMWGRKL NASSSANELL  1440
KLLTQLESAI KRDYLSSNFE TTRELFGSSF QSGNDSSTDS VLPWIPQITP AVALRLLELD  1500
SSIMYVKQEK VEPPENREAR ASYIKLPSRT TLFIKNKELE LKELDQDEPM KEENFADLSN  1560
SKRSSYKRGR GAREQGSGRK WQRKASGSKS DIGKQSAREN NNLSFHLKQQ SQRTGQSSGR  1620
GRRTVRKRAE RRVANSTIVT QMGDMVKPKS NTVSLRDLDE EWRTERFGMV ETVNPPDSNS  1680
TEEESDDNGQ GEGYEQGNWE LDLNGASNGW NREPTEASYE DDDAYEDDNG FEQMVEEESE  1740
GDLEMSDASD DVPNETRNDD GSDSADSEDY SD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	379	400	KRRKSEERMRKEMERHERERRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.4893	0.0	boll\| ovule

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-106	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449710.1	0.0	PREDICTED: uncharacterized protein LOC105772803 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2RDR8	0.0	A0A0D2RDR8_GOSRA; Uncharacterized protein
STRING	Gorai.010G256900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1