PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G2161

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HB-other

Protein Properties

Length: 1774aa MW: 200327 Da PI: 5.0823

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G2161	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.8	9.1e-19	29	84	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps+++r eL++klgL++rq ++WF+ rR kekk Gh_D06G2161 29 PKRQMKTPFQLEALEKAYALETYPSEATRVELSEKLGLSDRQLQMWFCHRRLKEKK 84 69*****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-18	14	84	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.84E-17	18	84	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.503	25	85	IPR001356	Homeobox domain
SMART	SM00389	9.6E-18	27	89	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-16	29	84	IPR001356	Homeobox domain
CDD	cd00086	2.34E-14	30	84	No hit	No description
SMART	SM00571	2.0E-21	542	601	IPR018501	DDT domain
PROSITE profile	PS50827	16.679	542	601	IPR018501	DDT domain
Pfam	PF02791	1.9E-16	543	598	IPR018501	DDT domain
Pfam	PF05066	1.6E-14	749	816	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-8	968	1012	IPR028942	WHIM1 domain
Pfam	PF15613	2.4E-12	1153	1225	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1774 aa Download sequence Send to blast
MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRVEL 60 SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS 120 GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML 180 GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS 240 DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH 300 VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRQVSSLSDE 360 TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER 420 TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL 480 LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK RPFDIQPWID 540 SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA LLRSIIKDIE 600 DVARTPATGL GMNQYCAANP EGGHLQIVEG VSGVIGFSCC LFSLLLNHFA FGVCQAYSWG 660 FDIRNWQHHL NPLTWPEIFR QLAISAGFGP QLKKQNATWT YTGDNDEGKG CADVVSTLRN 720 GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL ELADKIQKSG 780 LRDLTTSKTP EASISVALTR DGKLFERIAP STYCVRPAYR KDPADAEAIL ATARRKIRQF 840 ENGFLGGEDA DEVERDEVER DDVERDEDSE CDVDEDPEVD DIATPSNANK VADYPKNEVN 900 ACLGSKNFHA SADDELDVQS EFDKDFPPFP SNTVKVDNDP SNTGQYVASE ENGTGNPDQQ 960 NIEIDESESG ESWIQGLSEG EYSHLSVEER LNALVALIGI ANEGNSIRAV LEDRLEAANA 1020 LKKQMWAEAQ LDKSRLKEEC IIKMDFPPVM GIKTDAQLPN SAVEGSRSPF PVADNKNDEA 1080 SPSIPEDQKP LLCSQNVQND LNSYPAERAL VLQDASMGPE NFSAQQHGYA SKRSRSQLKS 1140 YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS GQIFVELHDG KWRLIDSEEA 1200 FDALLASLDA RGIRESHLRI MLRKIESSFK ENVRRNLHSA RAMGRSGNSE NEASEIDSGP 1260 DFTGSFDSPR SGICGLNSDA SGTLPCFKIQ LGRNENERKS AMERYQDFQR WMWNECYNSS 1320 IWCAMKYEKK RCTQLLAVCD TCLGSHMPED VHCSYCHQTF RAFNNNFNFY DHEIRCKENR 1380 KLDNKDKHTL DSSLPMGINL LKSSCALVEV SIPPEALGSM WAEGQRKMWG RKLNASSSTD 1440 ELLKLLTQLE SAIKRDYLSS NFETTRELLG SSLQSENDSS TVSVLPWIPQ TTPAVALRLL 1500 ELDSSIMYVK PEKVEPPENR EARASYIKLP SRTSLFIKNK ELELKELDQD EPMKENFTDL 1560 SNSKRSSYKR GRGAREQGSG RKWQRKGSGS KSDAGKQIVG ENNNLSFQLK QQSQRTGQSS 1620 GHGRRTVRKR AESRAANSTI MARMSDVVKP KADAVSVRDL DEEWRTERFG MMATVNPPDS 1680 NSTEEESDDD GQGEGYGQGN WELDLNGASN GWSREPMEAS YEEDDTYEDD NGIEQVVEEE 1740 SDGDLEMSDA SDDVPNETRN DIGLDSADSE DYSD

Sequence ? help Back to Top

Protein Sequence Length: 1774 aa Download sequence Send to blast

MEAGSEGENN QINNPNKNVS SSNEGNVKPK RQMKTPFQLE ALEKAYALET YPSEATRVEL  60
SEKLGLSDRQ LQMWFCHRRL KEKKDTPTKK PRKVAALPPE SPIDELRAGP GPDYGSGSGS  120
GSSPNMDTRK LGGSSSRGMT EDVQTVRRYY ESQQSIMELR AIACVEAQLG EPLRDDGPML  180
GMEFDPLPPD AFGAIPEPHN RSGHPYESKV YERHDGWSSK VAARAFHEYQ FLPEHSSLRS  240
DAYGLVTQSH FHESPVSGVR GRASPFVHGE EPLSRIHGIQ GHGSRALVLP QQGIIPSSSH  300
VADDSLAERE SLTNGRNAPS ICHPVLGSED LYMLSAEQTL NNDADPRIDR KRQVSSLSDE  360
TRIAKEVEAH ENRIRKELEK LDHKRRKSEE RMRKEMERLE RERRKEEERL MREKQREEER  420
TQREQKREME RRQKFLQKEY LRAEKKRQKE ELRREREEER RRVAREKATA RKIAKESMDL  480
LEDEQLELME LAAARKGIYS IIHLEHDTLQ NLESFRDSLS VFPPKSVQLK RPFDIQPWID  540
SEENVGNLLM AWRFLITFAD ILRLWPFTLD EFVQAFHDYD SRLLGEIHVA LLRSIIKDIE  600
DVARTPATGL GMNQYCAANP EGGHLQIVEG VSGVIGFSCC LFSLLLNHFA FGVCQAYSWG  660
FDIRNWQHHL NPLTWPEIFR QLAISAGFGP QLKKQNATWT YTGDNDEGKG CADVVSTLRN  720
GSAAENAFAL MREKGLLLPR RSRHRLTPGT VKFAAFHVLS LEGSKGLTVL ELADKIQKSG  780
LRDLTTSKTP EASISVALTR DGKLFERIAP STYCVRPAYR KDPADAEAIL ATARRKIRQF  840
ENGFLGGEDA DEVERDEVER DDVERDEDSE CDVDEDPEVD DIATPSNANK VADYPKNEVN  900
ACLGSKNFHA SADDELDVQS EFDKDFPPFP SNTVKVDNDP SNTGQYVASE ENGTGNPDQQ  960
NIEIDESESG ESWIQGLSEG EYSHLSVEER LNALVALIGI ANEGNSIRAV LEDRLEAANA  1020
LKKQMWAEAQ LDKSRLKEEC IIKMDFPPVM GIKTDAQLPN SAVEGSRSPF PVADNKNDEA  1080
SPSIPEDQKP LLCSQNVQND LNSYPAERAL VLQDASMGPE NFSAQQHGYA SKRSRSQLKS  1140
YIAHRAEEMY VYRSLPLGQD RRRNRYWQFV ASASKNDPCS GQIFVELHDG KWRLIDSEEA  1200
FDALLASLDA RGIRESHLRI MLRKIESSFK ENVRRNLHSA RAMGRSGNSE NEASEIDSGP  1260
DFTGSFDSPR SGICGLNSDA SGTLPCFKIQ LGRNENERKS AMERYQDFQR WMWNECYNSS  1320
IWCAMKYEKK RCTQLLAVCD TCLGSHMPED VHCSYCHQTF RAFNNNFNFY DHEIRCKENR  1380
KLDNKDKHTL DSSLPMGINL LKSSCALVEV SIPPEALGSM WAEGQRKMWG RKLNASSSTD  1440
ELLKLLTQLE SAIKRDYLSS NFETTRELLG SSLQSENDSS TVSVLPWIPQ TTPAVALRLL  1500
ELDSSIMYVK PEKVEPPENR EARASYIKLP SRTSLFIKNK ELELKELDQD EPMKENFTDL  1560
SNSKRSSYKR GRGAREQGSG RKWQRKGSGS KSDAGKQIVG ENNNLSFQLK QQSQRTGQSS  1620
GHGRRTVRKR AESRAANSTI MARMSDVVKP KADAVSVRDL DEEWRTERFG MMATVNPPDS  1680
NSTEEESDDD GQGEGYGQGN WELDLNGASN GWSREPMEAS YEEDDTYEDD NGIEQVVEEE  1740
SDGDLEMSDA SDDVPNETRN DIGLDSADSE DYSD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	84	RRLKEKKD
2	383	404	KRRKSEERMRKEMERLERERRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.20391	0.0	boll

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269\|PubMed:22694359}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX582386	1e-106	JX582386.1 Gossypium hirsutum clone NBRI_GE15206 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012449688.1	0.0	PREDICTED: uncharacterized protein LOC105772786 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A0D2UK26	0.0	A0A0D2UK26_GOSRA; Uncharacterized protein
STRING	Gorai.010G243500.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8347	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1