PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_D06G1906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 314aa MW: 33872.3 Da PI: 5.3024 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 58.2 | 1.8e-18 | 6 | 86 | 18 | 98 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P arikki++adedv +i+ +Pvl+ska elf+ +l ++ + + +t++ ++ +v++ ++fdfl div r Gh_D06G1906 6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86 5789**************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 1.5E-25 | 3 | 72 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.29E-20 | 4 | 89 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.1E-19 | 8 | 71 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK 60 TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDATAA AAAGGTDDRT ISRRRKATGD 120 EVNDSDEESK RSRMHDMGHA GTSGRGRGRG RGRGRGRGAR NVERDAHREI EPEPCSTLQQ 180 NNKSHSTSGM VIDDGSELKE PVKENTAAED ANQAVRNFDL NAEVDENVDT KASATAAKVA 240 APASSVGVAS AAAAPAAPAA AAQPSTAEPT TEAKHEEYPG WSLSDMDKIA IDPLQLARLG 300 GRLDEDEEDY DEEG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_A | 1e-19 | 2 | 72 | 5 | 75 | Transcription Regulator NC2 alpha chain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 146 | 156 | RGRGRGRGRGR |
2 | 148 | 157 | RGRGRGRGRG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.3005 | 0.0 | boll| ovule |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX964448 | 0.0 | JX964448.1 Gossypium hirsutum clone NBRI_TRANS-717 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012449612.1 | 0.0 | PREDICTED: uncharacterized protein LOC105772740 | ||||
TrEMBL | A0A0D2UIM6 | 0.0 | A0A0D2UIM6_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.010G215200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3506 | 24 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12480.1 | 6e-69 | nuclear factor Y, subunit C11 |