PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1906
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-YC
Protein Properties Length: 314aa    MW: 33872.3 Da    PI: 5.3024
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1906genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.21.8e-186861898
        NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                 ++++P arikki++adedv +i+  +Pvl+ska elf+ +l   ++  + +   +t++   ++ +v++ ++fdfl div r
  Gh_D06G1906  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDHTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDIVSR 86
                 5789**************************************************************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.5E-25372IPR009072Histone-fold
SuperFamilySSF471139.29E-20489IPR009072Histone-fold
PfamPF008085.1E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDHT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL RDIVSRVPDY GHGHSDATAA AAAGGTDDRT ISRRRKATGD  120
EVNDSDEESK RSRMHDMGHA GTSGRGRGRG RGRGRGRGAR NVERDAHREI EPEPCSTLQQ  180
NNKSHSTSGM VIDDGSELKE PVKENTAAED ANQAVRNFDL NAEVDENVDT KASATAAKVA  240
APASSVGVAS AAAAPAAPAA AAQPSTAEPT TEAKHEEYPG WSLSDMDKIA IDPLQLARLG  300
GRLDEDEEDY DEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-19272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146156RGRGRGRGRGR
2148157RGRGRGRGRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30050.0boll| ovule
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9644480.0JX964448.1 Gossypium hirsutum clone NBRI_TRANS-717 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012449612.10.0PREDICTED: uncharacterized protein LOC105772740
TrEMBLA0A0D2UIM60.0A0A0D2UIM6_GOSRA; Uncharacterized protein
STRINGGorai.010G215200.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35062458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.16e-69nuclear factor Y, subunit C11