PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1801
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 720aa    MW: 81168.9 Da    PI: 5.7056
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1801genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS391.97e-1203467161373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lL+ cA+av+++d + a++lL+++++++sp gd mqRla+yf+ +L+arla+s+++ y+ + +++ts    ++ l+a++lf  ++P+ k+s++  
  Gh_D06G1801 346 LRTLLTLCAQAVATDDRRSANELLKQIRQHSSPMGDGMQRLAHYFVDGLEARLAGSGTQSYNPVVTRPTS---AANILKAYHLFLAACPFRKLSNFFS 440
                  5789*********************************************************999999999...999********************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                    +I++ +e++ r+HiiDf+i +G+QWp+L++ L+sRp+gpp+l+iTg++ p++g   +e++eetg+rLa++Ae+++vpfefn+ +a++++++++e++
  Gh_D06G1801 441 DTTIMNLAENAARLHIIDFGILYGFQWPCLIRRLSSRPGGPPKLKITGIDLPQPGfrPAERVEETGRRLANYAEAFKVPFEFNA-IAQKWDTIQIEDI 537
                  ******************************************************9*****************************.7************ PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  ++++gE+l+Vn++++l +llde+v +es+r++vL+l+++l P+v+++   +  ++++ F +rf eal +ys+lfd+le+++pre  er+ +Ere++g+
  Gh_D06G1801 538 KIESGEVLIVNCIYRLRNLLDETVVVESPRNKVLNLMRKLHPDVFILGIVNGAYSAPFFITRFREALFHYSTLFDMLETNVPREIPERMLIEREIFGW 635
                  ************************************************************************************************** PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  e++nv+acegaer+er et+++W+ r ++aGF+++pl+++++k+ak  +++ + + + ++e++++l++gWk+r +++ S+W
  Gh_D06G1801 636 EAMNVIACEGAERIERPETYKQWQVRNTRAGFRQLPLDKEMMKTAKERVNTNYHKDFVIDEDNHWLLQGWKGRIVYAHSCW 716
                  *****************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.316320697IPR005202Transcription factor GRAS
PfamPF035142.4E-117346716IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    Send to blast
MDPSLQGLYS SVDRFRVNDD TLLAISSPNF NNGFKNETFA GIPPLQPATI PINLLPSASV  60
NEPEDYDFSD LVLKYISEML MEEDMEDKTC MFKESSAALQ AAEKSFYEVL GEQYPPSLEP  120
ELKYQNHESS NELHGHSCCS CSSADGNLLN LPSNYDLGMQ MSLNYSSQAN SSHSSGNSAG  180
SLVDGFTDSP VSTPRLPEIF GDSESVIQFR KGFEEASRFL PNRGNLFVDV ESDGLFLKEV  240
KEEAKSVVEK VENELLQDGS RGKKKPYPED VNLYNGRSNK QSLVYTESTV SPEMFDTVLL  300
NCQSVADLQK VLQHETNKNV QQNGQSKGPT GGKARAKKGK RNVVDLRTLL TLCAQAVATD  360
DRRSANELLK QIRQHSSPMG DGMQRLAHYF VDGLEARLAG SGTQSYNPVV TRPTSAANIL  420
KAYHLFLAAC PFRKLSNFFS DTTIMNLAEN AARLHIIDFG ILYGFQWPCL IRRLSSRPGG  480
PPKLKITGID LPQPGFRPAE RVEETGRRLA NYAEAFKVPF EFNAIAQKWD TIQIEDIKIE  540
SGEVLIVNCI YRLRNLLDET VVVESPRNKV LNLMRKLHPD VFILGIVNGA YSAPFFITRF  600
REALFHYSTL FDMLETNVPR EIPERMLIER EIFGWEAMNV IACEGAERIE RPETYKQWQV  660
RNTRAGFRQL PLDKEMMKTA KERVNTNYHK DFVIDEDNHW LLQGWKGRIV YAHSCWVPAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-5035372025381Protein SCARECROW
5b3h_D3e-5035372025381Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5774840.0JX577484.1 Gossypium hirsutum clone NBRI_GE9321 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681562.10.0PREDICTED: scarecrow-like protein 30
RefseqXP_016681563.10.0PREDICTED: scarecrow-like protein 30
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A1U8IYX40.0A0A1U8IYX4_GOSHI; scarecrow-like protein 30
STRINGGorai.010G201000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]