PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1740
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 429aa    MW: 47578.3 Da    PI: 6.0222
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1740genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.61.3e-14224271254
                  HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                   ++h + Er RR ++N++++ Lr+++P++     +K++ a+i+  A++YIk+L
  Gh_D06G1740 224 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVDDAIKYIKEL 271
                  579**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.085222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-14222290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.39E-12223271No hitNo description
Gene3DG3DSA:4.10.280.108.6E-13225279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-12225271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.9E-10228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MKVYEESGCF DPHSLPDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNSHSHLIPY LTQDLPYDQS HWESFNVVPS SSSPEAAAAA AAAASAYTPT  120
PDLLSLFHLP RCSFLPNPSI SFETTPGSPS VVYDPLFHLN LPPQPPVFRE LLQSLPHGYT  180
VPADDKDAAR VGGLYHDGDN GIIQFTRDIS MAGRAKDRDK AGKTTKHFAT ERERRVHLND  240
KYQALRTMVP SPTKNDRASI VDDAIKYIKE LLGTVRELKI LVDKKRCGQE RSKRLKTEDA  300
GSAADAGDVE CKPLGDPDQC YNTSLRSSWL QRKSKDSEVD VRIVDDEVTI KLVQRKKINC  360
LLFVSRLLDE LQLDLQHVAG GNIGDYYSFL FNTKIYEGSS VYACAIANKL IDVVDRQYAA  420
APPTSSTSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.30290.0boll| ovule
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012452120.10.0PREDICTED: transcription factor bHLH91-like
TrEMBLA0A0D2UHE60.0A0A0D2UHE6_GOSRA; Uncharacterized protein
STRINGGorai.010G191900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.11e-104bHLH family protein