PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1739

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 426aa MW: 47193.8 Da PI: 5.5219

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1739	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.4	1.5e-14	221	268	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h + Er RR ++N++++ Lr+++P++ +K++ a+i+ A++YIk+L Gh_D06G1739 221 TTKHFATERERRVHLNDKYQALRTMVPSP-----TKNDRASIVGDAIDYIKEL 268 579************************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	6.94E-15	219	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.945	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.71E-12	220	268	No hit	No description
Pfam	PF00010	3.2E-12	222	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-12	222	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-9	225	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME 60 PHQHYLLDNT TNNNSHMIPY LTQDLPYDQS HWESFNVVPS SSSPEAAAAA AGAYTPTPDL 120 LGLFHLPRCS FLPNPSISFE TTPGSPSVVY DPLFHLNLPP QPPVFRELLQ SLPHGYTVPA 180 DDKDAAGIGG LYHDGDNGII QFTRDISMAG RAKDRDKAGK TTKHFATERE RRVHLNDKYQ 240 ALRTMVPSPT KNDRASIVGD AIDYIKELLG TVRELQLLVD KKRCGQDRSK RLKTEDAASA 300 ADAGDVEFKS LGDPDQCYNT SLRSSWLQRK SKDSEVDVRI VDDEVTIKLV QRKKINCLLF 360 VSRLLDELQL DLLHVAGGNI GDYYSFLFNT KIYEGSSVYA CAIANKLIDV VDRQYAAAPP 420 TSSTSL

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MKVYEESGCF DPHSLTDCQE LMGLPGATPT NCHNSLEDTL NVSSYNHHHH EDASAALDME  60
PHQHYLLDNT TNNNSHMIPY LTQDLPYDQS HWESFNVVPS SSSPEAAAAA AGAYTPTPDL  120
LGLFHLPRCS FLPNPSISFE TTPGSPSVVY DPLFHLNLPP QPPVFRELLQ SLPHGYTVPA  180
DDKDAAGIGG LYHDGDNGII QFTRDISMAG RAKDRDKAGK TTKHFATERE RRVHLNDKYQ  240
ALRTMVPSPT KNDRASIVGD AIDYIKELLG TVRELQLLVD KKRCGQDRSK RLKTEDAASA  300
ADAGDVEFKS LGDPDQCYNT SLRSSWLQRK SKDSEVDVRI VDDEVTIKLV QRKKINCLLF  360
VSRLLDELQL DLLHVAGGNI GDYYSFLFNT KIYEGSSVYA CAIANKLIDV VDRQYAAAPP  420
TSSTSL

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Ghi.3029	0.0	boll\| ovule

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012452121.1	0.0	PREDICTED: transcription factor bHLH91-like
TrEMBL	A0A0D2UFE9	0.0	A0A0D2UFE9_GOSRA; Uncharacterized protein
STRING	Gorai.010G191800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31210.1	5e-99	bHLH family protein