PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1663
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family TALE
Protein Properties Length: 357aa    MW: 40295.2 Da    PI: 6.851
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1663genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-092853192155
                  HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  k +yps++++  LA+++gL+++q+ +WF N+R ++
  Gh_D06G1663 285 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 319
                  569*****************************885 PP
2ELK41.13.6e-14239260122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK qLlrKYsgyLgsLkqEF+
  Gh_D06G1663 239 ELKGQLLRKYSGYLGSLKQEFM 260
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.6E-20103147IPR005540KNOX1
PfamPF037901.7E-22105143IPR005540KNOX1
SMARTSM012564.9E-27152203IPR005541KNOX2
PfamPF037914.0E-21155202IPR005541KNOX2
PfamPF037895.9E-11239260IPR005539ELK domain
PROSITE profilePS5121311.174239259IPR005539ELK domain
SMARTSM011882.8E-8239260IPR005539ELK domain
PROSITE profilePS5007112.989259322IPR001356Homeobox domain
SMARTSM003897.4E-13261326IPR001356Homeobox domain
SuperFamilySSF466891.45E-19261336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28264324IPR009057Homeodomain-like
CDDcd000861.59E-12271323No hitNo description
PfamPF059206.4E-17279318IPR008422Homeobox KN domain
PROSITE patternPS000270297320IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MEGGSNSTSC MMAFGHNSNG LCPMTMMHHP MTSHLHPQHQ HHHHHPNSGS SSLFLPQPPT  60
NNQDQNHNSS SGSSMILDDQ HNTTTSNNNN TGCYFMESND GSSSVKAKIM AHPHYHRLLA  120
AYVNCQKVGA PPEVVARLEE ACASAATTGP TRTGCIGEDP ALDQFMEAYC EMLTKYEQEL  180
TKPFKEAMLF LQRVECQFKA LTVSSPNPAC GEGVDRNASS EEDVDVNNNF IDPLAEDREL  240
KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK EARQQLLDWW SRHYKWPYPS ESQKLALAES  300
TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDAAHPHYYM DNVLGNPFPM DLSPTLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254263LKQEFMKKRK
2260264KKRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.220490.0ovule
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
UniprotTISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016693280.10.0PREDICTED: homeobox protein SBH1-like
SwissprotP466081e-158HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A1U8JSR30.0A0A1U8JSR3_GOSHI; homeobox protein SBH1-like
STRINGGorai.010G183800.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64732644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-142KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]