PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gh_D06G1540

Organism

Gossypium hirsutum

Taxonomic ID

3635

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

LBD

Protein Properties

Length: 168aa MW: 18325 Da PI: 8.0547

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gh_D06G1540	genome	NAU-NBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	148.3	2e-46	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfanvhk+FGasnv k+l++lp ++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq+++l+++lal++ Gh_D06G1540 13 PCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQELPIHQRGDAVSSIVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALTQ 110 7**********************************************************************************************999 PP DUF260 99 ee 100 +e Gh_D06G1540 111 AE 112 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.691	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.9E-45	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MKESGRKQGA ASPCAACKLL RRRCAQDCVF APYFPADEPQ KFANVHKVFG ASNVNKMLQE 60 LPIHQRGDAV SSIVYEANAR VRDPVYGCVG AISSLQQQID TLQTQLALTQ AEVVHLRVRQ 120 TASFPHGFCP TSLSNSGSPT FKLMGSQTMP IFDVDMVVDS LGEPMCSF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-50	9	125	7	123	LOB family transfactor Ramosa2.1
5ly0_B	1e-50	9	125	7	123	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	109890639	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GQ394806	2e-61	GQ394806.1 Gossypium hirsutum cultivar Delta Opal clone MONCS1829 SSR marker DPL0016 genomic sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016683574.1	1e-123	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	4e-78	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1U8J5T8	1e-122	A0A1U8J5T8_GOSHI; LOB domain-containing protein 4-like
STRING	Gorai.010G170700.1	1e-116	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-74	LOB domain-containing protein 4