PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1486
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 276aa    MW: 31622.7 Da    PI: 9.2922
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1486genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY107.47.1e-34136193259
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  +Dgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+vers +dp++v++tYeg+H+h+
  Gh_D06G1486 136 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCRVKKRVERSFQDPSMVITTYEGQHKHP 193
                  8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.7E-35120195IPR003657WRKY domain
SuperFamilySSF1182907.32E-30127195IPR003657WRKY domain
PROSITE profilePS5081132.776130195IPR003657WRKY domain
SMARTSM007742.6E-39135194IPR003657WRKY domain
PfamPF031062.3E-26136193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MWDHEFRNFH CPTDHTCSRV SLSAADPCSY MRLNFTDSLQ SPIGYGRSLE KALAFSHSSS  60
SQPPFSSVGA TPNSCISYSS TQDGSDKSNK DCQLKELEDG SESSKKGNKL ANKKGEKKHK  120
ETRFAFMTKS EVDLLEDGYR WRKYGQKAVK NSPYPRSYYR CTTQKCRVKK RVERSFQDPS  180
MVITTYEGQH KHPLPTTVKR PMLFPSFMLR PSPPPPRRRH ELFTRMPGDM NNYQVAAGAD  240
SLMFAENFSP FLQVPDNELF QDMVPSAFLK HEPYEQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-30125195777Probable WRKY transcription factor 4
2lex_A4e-30125195777Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0310890.0KF031089.1 Gossypium hirsutum WRKY transcription factor 44 (WRKY44) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016681496.10.0PREDICTED: probable WRKY transcription factor 71
SwissprotQ93WV49e-53WRK71_ARATH; WRKY transcription factor 71
TrEMBLA0A1U8ITV40.0A0A1U8ITV4_GOSHI; probable WRKY transcription factor 71
TrEMBLA0A2P5R4X10.0A0A2P5R4X1_GOSBA; Uncharacterized protein
STRINGGorai.010G164700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15242693
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-52WRKY DNA-binding protein 71
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]
  2. Yu Y, et al.
    WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana.
    Plant J., 2016. 85(1): p. 96-106
    [PMID:26643131]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Yu Y, et al.
    WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana.
    Plant Cell Physiol., 2018. 59(2): p. 414-422
    [PMID:29272465]