PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_D06G1403
Common NameCBF12
Organism
Gossypium hirsutum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 228aa    MW: 25058.9 Da    PI: 9.0875
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_D06G1403genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.2e-202070256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a++aa+++++g+
  Gh_D06G1403 20 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDAAAREFRGA 70
                 69*******.**********8...557*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.1E-322077IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-222078IPR016177DNA-binding domain
CDDcd000182.42E-182078No hitNo description
PfamPF008474.4E-142069IPR001471AP2/ERF domain
PROSITE profilePS5103223.8942077IPR001471AP2/ERF domain
SMARTSM003801.5E-382083IPR001471AP2/ERF domain
PRINTSPR003674.6E-112132IPR001471AP2/ERF domain
PRINTSPR003674.6E-114359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAPREKTAAV KGTGNNNEVH FRGVRKRPWG RYAAEIRDPG KKSRVWLGTF DTAEEAARAY  60
DAAAREFRGA KAKTNFPVPC ENLSKGNNCK SNGNNNQHSP SQSSTVESSS REPALMVDSS  120
PLDLNLVQGE AVTGYVPTAV RFPFQQASPV PYIAGRKVFY FEPFVRPGAV KGHPFERFGF  180
DHHDLHATFN GVQSDSDSSS VVDLNHHEVK SRPLLNIDLN QPAVPEIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-212078261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-212078564ATERF1
3gcc_A6e-212078564ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ghi.97260.0boll| leaf| ovule| root| stem
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP7801950.0KP780195.1 Gossypium hirsutum C-repeat binding factor 12 (CBF12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001313841.11e-170ethylene-responsive transcription factor 4-like
TrEMBLA0A141AX531e-169A0A141AX53_GOSHI; C-repeat binding factor 12
STRINGGorai.010G155900.11e-169(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2470534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-25ERF domain protein 11